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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAGGTGAAAGTGAATTCTGTTTTCCTCCGGGATTCAACTGCTATATCTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttccttgcattgcttgtacaggaaatctttttttttcagatttgaaaatgtatcattgcataataatttgtgcatgctgtag

Basic information

species Zea mays
transcript GRMZM2G373175_T01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G373175_T01 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 11
TGAGAAGGTGAAAGTGAATTCTGTTTTCCTCCGGGATTCAACTGCTATATCTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttc-cttgcattgcttgtacaggaaatctttttttttcagatttgaaaatgtatcattgcataataatttgtgcatgctgtag
|||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||  | || ||||||  |||||||||||||||||||||| ||||  ||| ||| ||| |           || ||  | | ||  | ||| |||  ||||  ||||  ||  | ||||||| ||
TGAGAAGGTGAAGGTGAATTCTGTTTTTCTCCGGGACTCAACGGCTATATCTGATTCTATACTGTTACTCTTTGGAGGCAACATAAAACAAGGGGGCTTGgtaagttcatttgaattacttat-----------ttgttgctgaaataagcaaaggtactattggctaatttttacttcatgctgcag

upper sequence: GRMZM2G373175_T01 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 17
TGAGAAGGTGAAAGTGAATTCTGTTTTCCTCCGGGATTCAACTGCTATATCTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttcct--tgcattgcttgtacaggaaatctttt--tttttcagatttgaaaatgtatcattgcataataatttgtgcatgct-gtag---------------------------
||| ||||||||||||||||| || |||||  |||||||||||| ||||||||||||  | ||  | ||||| || ||     ||     ||| ||  | ||| |||| |     ||| | | | ||      |  |   | | |     ||||   | | | | |   |  |   || ||  | ||  | |                           
TGAAAAGGTGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGGTATATCTGATTCAGTGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTAgtaagttcttaccatatttcctcttcacttttcccctggatctgttgatcttgactgtatgt-actaggtgtttccttttggctacttattgtgctttggcatgtgattcttttgacag

upper sequence: GRMZM2G373175_T01 (Zea mays), 5'ss of exon 17
lower sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 17
TGAGAAGGTGAAAGTGAATTCTGTTTTCCTCCGGGATTCAACTGCTATATCTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttccttgc-----attgcttgtacaggaaatcttt------ttttttcagatttgaaaatgtatcat--tgcataataatttgtgcatgct-gtag
||||||| | ||||| ||||||||||| |||||||||||||| ||| | ||||||||  | ||  |  |||| || |||  |||      |||||     ||  ||| |||||     | |  || |     || | | |      ||| |   |  || | ||| |   ||    || | |    | |||||| | ||  
TGAGAAGATAAAAGTAAATTCTGTTTTTCTCCGGGATTCAACAGCTGTGTCTGATTCAGTGCTTCTTCTATTTGGGGGCGACATCTTGAGAGGGGATGGTgtgagtttcttgctcaacaataattattttaaaattttctcctaactttatatggtcttaataatttggaatgacacacattctcatttgcatgtttgtt-

upper sequence: GRMZM2G373175_T01 (Zea mays), 5'ss of exon 17
lower sequence: Vv17s0000g03030.t01 (Vitis vinifera), 5'ss of exon 16
TGAGAAGGTGAAAGTGAATTCTGTTTTCCTCCGGGATTCAACTGCTATATCTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttccttgcattgcttgtacaggaaatcttt-----------ttttttca-------gatt--tgaaaatgtatcattgcataataatttgt-gcatgctgtag---------------------
||| |||||||| |||||||| ||||||||||| ||||| |||||| ||||||||||||| ||  | ||||| |||||  | ||      ||||||  | ||| ||| |||      ||| |       ||   |           |  |||||       ||||  | ||||| |||       || | || ||   ||| |  |||                     
TGAAAAGGTGAAGGTGAATTCAGTTTTCCTCCGTGATTCCACTGCTGTATCTGATTCTATGCTTCTTTTATTTGGAGGACGTATTTCCAGAGGGGGAATTgtaagtttcttatcccacttatttgcagtattcctaggatgatacctcctttcaagaagatgattcctaaaaatatatttcaaattagttatatgccacattcgctagaatgatttcttgctttggtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211272990|gb|FL022928.1|FL022928
EST:     CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTG                         GATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
genomic: CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttcct ... catgctgtagGATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
EST: gi|211272993|gb|FL022931.1|FL022931
EST:     CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTG                         GATGGACACTTAAAAATGCTTGGAGGGTATCTTGAGTTCTTCATGAATCGC
genomic: CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttcct ... catgctgtagGATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
EST: gi|211272997|gb|FL022935.1|FL022935
EST:     CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTG                         GATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
genomic: CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttcct ... catgctgtagGATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
EST: gi|13316191|gb|BG410638.1|BG410638
EST:     CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTG                         GATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
genomic: CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttcct ... catgctgtagGATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
EST: gi|211272995|gb|FL022933.1|FL022933
EST:     CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTG                         GATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
genomic: CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttcct ... catgctgtagGATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
EST: gi|211272996|gb|FL022934.1|FL022934
EST:     CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTG                         GATGNACACTCNAAAATGCTTGGAGGTTATCCTGAGTTCTTCATGAATCGC
genomic: CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttcct ... catgctgtagGATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
EST: gi|211272991|gb|FL022929.1|FL022929
EST:     CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTG                         GATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
genomic: CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttcct ... catgctgtagGATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
EST: gi|31352989|gb|CD437346.1|CD437346
EST:     CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTG                         GATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
genomic: CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttcct ... catgctgtagGATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
EST: gi|211272994|gb|FL022932.1|FL022932
EST:     CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTG                         GATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
genomic: CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttcct ... catgctgtagGATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
EST: gi|211272992|gb|FL022930.1|FL022930
EST:     CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTG                         GATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
genomic: CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttcct ... catgctgtagGATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
EST: gi|13316192|gb|BG410639.1|BG410639
EST:     CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTG                         GATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC
genomic: CTGATTCTATACTGTTGTTATTCGGAGGCTGCATAAAACAAGGGGGCTTGgtatgttcct ... catgctgtagGATGGACACTTAAAAATGCTTGGAGGTTATCTTGAGTTCTTCATGAATCGC