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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCAACCTCGCCAGGGTAAATATCTGGCAGCTGCCTCAGAAAAGGGAATATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAGgttggtaactagataccccacatccagtatccgctggtgaggctttcattattccttatgtgcagtctatgctaaacaatgacccccactcctagtctcc...

Basic information

species Zea mays
transcript GRMZM2G361398_T02
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60355271|gb|DN222244.1|DN222244
EST:     TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAG                         GGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTAT
genomic: TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAGgttggtaact ... ttttatgtagGGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTAT
EST: gi|24766351|gb|CA401505.1|CA401505
EST:     TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAG                         GGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTAT
genomic: TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAGgttggtaact ... ttttatgtagGGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTAT
EST: gi|60351102|gb|DN218075.1|DN218075
EST:     TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAG                         GGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTAT
genomic: TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAGgttggtaact ... ttttatgtagGGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTAT
EST: gi|78109474|gb|DV527890.1|DV527890
EST:     TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAG                         GGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTAT
genomic: TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAGgttggtaact ... ttttatgtagGGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTAT
EST: gi|31358706|gb|CD443063.1|CD443063
EST:     TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAG                         GGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTAT
genomic: TATCCATACTGGATGCGGAGACATTACAAGTTTGTAGAACTCCTTTGCAGgttggtaact ... ttttatgtagGGCCACGTACAGATTATTCAGTCAGTATGTTGGGATGCCGCGGGCAACTAT