Sequence
atgc intronic sequence ATGC exonic sequenceACTTGAAATAGCAATTACAAAGTTGCTATTGAAGTCATATTACAATATTGTCAGGAAAAATGTGGAGGACTTCATACCAAAAGCAATTATGCATTTCCTGgtatgagagattcttatccaattgtcctttatgtgcgcattccatctctgtatgcaatccttgtgctacttttaatggcatggtaggcttagatgtcagt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G180335_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g69130.2 (Oryza sativa), 5'ss of exon 17
ACTTGAAATAGCAATTACAAAGTTGCTATTGAAGTCATATTACAATATTGTCAGGAAAAATGTGGAGGACTTCATACCAAAAGCAATTATGCATTTCCTGgtatgagagattcttatccaattgtcctttatgtgcgcattccatctctgtatgcaatccttgtgctacttttaatggcatggtaggcttagatgtcagt---
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GCTTGAAATAGCAATAACTAAGTTGCTACTGAAGTCATATTACAATATAGTGCGGAAAAATGTTGAGGACTTCGTTCCAAAGGCAATCATGCATTTTCTGgtccgtgatcgttgtctcacttttctcattat-tactcgctttgcataggatggtgatttatttggcacattatttcg-attataa-ctaatgtttctggaca
upper sequence: GRMZM2G180335_T03 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 17
ACTTGAAATAGCAATTACAAAGTTGCTATTGAAGTCATATTACAATATTGTCAGGAAAAATGTGGAGGACTTCATACCAAAAGCAATTATGCATTTCCTGgtatgagagattcttatccaattgtcctttatgtgcgcattccatctctgtatgcaat--ccttgtgctacttttaatg--gcatggtaggcttagatgtcagt
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TATTGAAATAACAGTGACAAAGTTGCTTTTGAGATCATACTACGGCATTGTCAGAAAAAATGTTGAGGATCTTATCCCCAAAGCAATTATGCATTTCTTGgtactttactacttcatatccttgtagaattttcaaggtatataaatctaaaagtagtaatcttttgctgtcttttatgttgcatacagaaaattagggt----
upper sequence: GRMZM2G180335_T03 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 17
ACTTGAAATAGCAATTACAAAGTTGCTATTGAAGTCATATTACAATATTGTCAGGAAAAATGTGGAGGACTTCATACCAAAAGCAATTATGCATTTCCTGgtatgagagattcttatccaattgtcctttatgtgcgcattccatctctgtatgcaatccttgtgct-acttttaatggcatggtaggctt--agatgtcagt--
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TGTTGAAATCACAGTAACAAAGTTGCTTTTGAAATCATACTATGACATTGTCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTGgtactttatattcttcttctaggctttgctaaattgtttttcaat---tagatgc--cccaaatgatgaatattagacaaataatctgctttcaatttccaaatt
upper sequence: GRMZM2G180335_T03 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 17
ACTTGAAATAGCAATTACAAAGTTGCTATTGAAGTCATATTACAATATTGTCAGGAAAAATGTGGAGGACTTCATACCAAAAGCAATTATGCATTTCCTGgtatgagagattcttatccaattgtcctttatgtgcgcattccatctctgtatgcaatccttgtgctacttttaatggcatggtaggcttagatgtcagt-
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TGTTGAAATCACAGTAACAAAGTTGCTTTTGAAATCATACTATGACATTGTCAGGAAAAATGTTGAGGATCTTGTCCCCAAAGCAATTATGCACTTCTTGgtacttcgtattcatcttctaggctttgcaaaatagttttttaattagatgctgcaaatggtgaa-tattagccaatataagtcagaagtcaccatcaaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78087100|gb|DV515493.1|DV515493EST: TCAGGAAAAATGTGGAGGACTTCATACCAAAAGCAATTATGCATTTCCTG GTTAATCACACAAAAAGGGCACTGCA
genomic: TCAGGAAAAATGTGGAGGACTTCATACCAAAAGCAATTATGCATTTCCTGgtatgagaga ... tctgttgcagGTTAATCACACAAAAAGGGCACTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTGAAATAGCAATTACAAAGTTGCTATTGAAGTCATATTACAATATTGTCAGGAAAAATGTGGAGGACTTCATACCAAAAGCAATTATGCATTTCCTGgtatgagagattcttatccaattgtcctttatgtgcgcattccatctctgtatgcaatccttgtgctacttttaatggcatggtaggcttagatgtcagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA