1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GACGACGATGGTGAACATCCAGGACCTGCCGCTGGAGGCGGTCCTCGACGAGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAGgtacgggtggtaggggtagccgtggcgcccatggcgggtggtggtcgtcgcaagccagctgacacctgcctcttctcttctccccccgtcccgagcag
species | Zea mays |
transcript | GRMZM2G178102_T01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAG GGCCTGGGGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAGEST: gi|71310371|gb|DR791491.1|DR791491
genomic: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAGgtacgggtgg ... tcccgagcagGGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAG
EST: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAG GGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAGEST: gi|6021905|gb|AW066833.1|AW066833
genomic: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAGgtacgggtgg ... tcccgagcagGGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAG
EST: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAG GGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAGEST: gi|89247875|gb|DY619661.1|DY619661
genomic: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAGgtacgggtgg ... tcccgagcagGGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAG
EST: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAG GGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAGEST: gi|60350156|gb|DN217129.1|DN217129
genomic: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAGgtacgggtgg ... tcccgagcagGGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAG
EST: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAG GGCCTGGGGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAGEST: gi|71315091|gb|DR794174.1|DR794174
genomic: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAGgtacgggtgg ... tcccgagcagGGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAG
EST: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAG GGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAGEST: gi|78024201|gb|DV492588.1|DV492588
genomic: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAGgtacgggtgg ... tcccgagcagGGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAG
EST: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAG GGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAGEST: gi|148960629|gb|EE011257.2|EE011257
genomic: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAGgtacgggtgg ... tcccgagcagGGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAG
EST: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAG GGCCTGGGGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAGEST: gi|60341255|gb|DN208228.1|DN208228
genomic: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAGgtacgggtgg ... tcccgagcagGGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAG
EST: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAG GGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAGEST: gi|148932540|gb|EC876347.2|EC876347
genomic: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAGgtacgggtgg ... tcccgagcagGGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAG
EST: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAG GGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAG
genomic: AGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAGgtacgggtgg ... tcccgagcagGGCCTGGCGTACCTCCCCGGTGGCGTGTGCAGGTCGAGCATGGGGCGGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGACGATGGTGAACATCCAGGACCTGCCGCTGGAGGCGGTCCTCGACGAGGAGGGCCAGAAGGCCCTGTCCGCGCAGCTCCCCGCGATCATGCAGCAGgtacgggtggtaggggtagccgtggcgcccatggcgggtggtggtcgtcgcaagccagctgacacctgcctcttctcttctccccccgtcccgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC