1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TGACCATGATGCTTTTGGGGAAGCTTCGGAAGGCGCAGAAGCTCGCACATCTTCTGTACCTGCATCAGATCTTCTGAGTATCGATCAGCTCCTTGAAACGgtatggcctttattcaagaaatctgttcttccttgcttttccttggtttatctgtccttggggtacggtcatgctgagatggccttgctttacaactcgtgttcacttggcatgataattttcgtattgtaatcgtgccacttatttcag
species | Zea mays |
transcript | GRMZM2G168449_T03 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: CTTCTGTACCTGCATCAGATCTTCTGAGTATCGATCAGCTCCTTGAAACG GTTGGTGCAGAACCAGCACCTCAGGCTGGAGTAGTGTCGGCAGACATTGGAEST: gi|78112306|gb|DV530700.1|DV530700
genomic: CTTCTGTACCTGCATCAGATCTTCTGAGTATCGATCAGCTCCTTGAAACGgtatggcctt ... cttatttcagGTTGGTGCAGAACCAGCACCTCAGGCTGGAGTAGTGTCGGCAGACATTGGA
EST: TCCTTGAAACG GTTGGTGCAGAACCAGCACCTCAGGCTGGAGTAGTGTCGGCAGACATTGGAEST: gi|211451737|gb|FL033183.1|FL033183
genomic: TCCTTGAAACGgtatggcctt ... cttatttcagGTTGGTGCAGAACCAGCACCTCAGGCTGGAGTAGTGTCGGCAGACATTGGA
EST: CTTCTGTACCTGCATCAGATCTTCTGAGTATCGATCAGCTCCTTGAAACG GTTGGTGCARAACCAGCACCTCAGGCTGGAGTAGTGTCGGCAGACATTGGAEST: gi|78112307|gb|DV530701.1|DV530701
genomic: CTTCTGTACCTGCATCAGATCTTCTGAGTATCGATCAGCTCCTTGAAACGgtatggcctt ... cttatttcagGTTGGTGCAGAACCAGCACCTCAGGCTGGAGTAGTGTCGGCAGACATTGGA
EST: TCCTTGAAACG GTTGGTGCAGAACCAGCACCTCAGGCTGGAGTAGTGTCGGCAGACATTGGA
genomic: TCCTTGAAACGgtatggcctt ... cttatttcagGTTGGTGCAGAACCAGCACCTCAGGCTGGAGTAGTGTCGGCAGACATTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACCATGATGCTTTTGGGGAAGCTTCGGAAGGCGCAGAAGCTCGCACATCTTCTGTACCTGCATCAGATCTTCTGAGTATCGATCAGCTCCTTGAAACGgtatggcctttattcaagaaatctgttcttccttgcttttccttggtttatctgtccttggggtacggtcatgctgagatggccttgctttacaactcgtgttcacttggcatgataattttcgtattgtaatcgtgccacttatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC