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AGCATTGGCCATGCCTATGAAGATATAATGTCACAAAATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAGgtgattattcaaagaaccgatttgagcaattaatttgtgttgatttctcctctccgtcttattgtttaagactttttctcgaaaagcgcaggagaactgc...
species | Zea mays |
transcript | GRMZM2G162184_T01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: ATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAG CTTTTCATGGAGGGCGTTAEST: gi|5325153|gb|AI783344.1|AI783344
genomic: ATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAGgtgattattc ... gctactgcagCTTTTCATGGAGGGTGTTA
EST: ATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAG CTTTTCATGGAGGGTGTTAAATCAAAACAGTCACACGATGCTTTGCATTTGEST: gi|32791610|gb|CD943846.1|CD943846
genomic: ATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAGgtgattattc ... gctactgcagCTTTTCATGGAGGGTGTTAAATCAAAACAGTCACACGATGCTTTGCATTTG
EST: ATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAG CTTTTCATGGAGGGTGTTAEST: gi|60351698|gb|DN218671.1|DN218671
genomic: ATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAGgtgattattc ... gctactgcagCTTTTCATGGAGGGTGTTA
EST: ATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAG CTTTTCATGGAGGGTGTTAAATCAAAACAGTCACACGATGCTTTGCATTTGEST: gi|32806867|gb|CD959101.1|CD959101
genomic: ATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAGgtgattattc ... gctactgcagCTTTTCATGGAGGGTGTTAAATCAAAACAGTCACACGATGCTTTGCATTTG
EST: ATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAG CTTTTCATGGAGGGTGTTAEST: gi|47961592|gb|CN844301.1|CN844301
genomic: ATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAGgtgattattc ... gctactgcagCTTTTCATGGAGGGTGTTA
EST: ATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAG CTTTTCATGGAGGGTGTTAAATCAAAACAGTCACACGATGCTTTGCATTTGEST: gi|5847246|gb|AW000325.1|AW000325
genomic: ATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAGgtgattattc ... gctactgcagCTTTTCATGGAGGGTGTTAAATCAAAACAGTCACACGATGCTTTGCATTTG
EST: ATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAG CTTTTCATGGAGGGTGTTAAATCAAAACAGTCACACGATGCTTTGCATTTGEST: gi|31353389|gb|CD437746.1|CD437746
genomic: ATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAGgtgattattc ... gctactgcagCTTTTCATGGAGGGTGTTAAATCAAAACAGTCACACGATGCTTTGCATTTG
EST: ATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAG CTTTTCATGGAGGGTGTTAAATCAAAACAGTCACACGATGCTTTGCATTTG
genomic: ATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAGgtgattattc ... gctactgcagCTTTTCATGGAGGGTGTTAAATCAAAACAGTCACACGATGCTTTGCATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCATTGGCCATGCCTATGAAGATATAATGTCACAAAATCAACAATTGCTACAGCAGATTATTGAAAGAGATGATCATAATACCAAGgtgattattcaaagaaccgatttgagcaattaatttgtgttgatttctcctctccgtcttattgtttaagactttttctcgaaaagcgcaggagaactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctctccg