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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCCTCGAAGAGATACAATGGTCGTTCCGCTGAGCACCAACATCGTCAAAATGCGAAATGGTTCTTCGAGTTTTGTCGCTTTAGATAGTAAGAATATGgttgttcttattcatctgcaatagttcttcatgttttttttttgtcgctttagatcgagaacgttggttgacataatgttcttgtctattctttcgcag

Basic information

species Zea mays
transcript GRMZM2G160460_T02
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78105585|gb|DV524003.1|DV524003
EST:     AAATGCGAAATGGTTCTTCGAGTTTTGTCGCTTTAGATA-----------                         CTCAAATCACTCGACGAAGGCCACACATTCTTTCTGTTCATAAAAGGTCTT
genomic: AAATGCGAAATGGTTCTTCGAGTTTTGTCGCTTTAGATAGTAAGAATATGgttgttctta ... tctttcgcagCTCAAATCACTCGACGAAGGCCACACATTCTTTCTGTTCATAAAAGGTCTT
EST: gi|60400681|gb|DN233488.1|DN233488
EST:     AAATGCGAAATGGTTCTTCGAGTTTTGTCGCTTTAGATA-----------                         CTCAAATCACTCGACGAAGGCCACACATTCTTTCTGTTCATAAAAGGTCTT
genomic: AAATGCGAAATGGTTCTTCGAGTTTTGTCGCTTTAGATAGTAAGAATATGgttgttctta ... tctttcgcagCTCAAATCACTCGACGAAGGCCACACATTCTTTCTGTTCATAAAAGGTCTT
EST: gi|60350213|gb|DN217186.1|DN217186
EST:     AAATGCGAAATGGTTCTTCGAGTTTTGTCGCTTTAGATA-----------                         CTCAAATCACTCGACGAAGGCCACACATTCTTTCTGTTCATAAAAGGTCTT
genomic: AAATGCGAAATGGTTCTTCGAGTTTTGTCGCTTTAGATAGTAAGAATATGgttgttctta ... tctttcgcagCTCAAATCACTCGACGAAGGCCACACATTCTTTCTGTTCATAAAAGGTCTT
EST: gi|5608265|gb|AI901932.1|AI901932
EST:     AAATGCGAAATGGTTCTTCGAGTTTTGTCGCTTTAGATAGTAAGAATATG                         CTCAAATCACTCGATGAAGGCCACACATTCTTTCTGTTCATAAAAGGTCTT
genomic: AAATGCGAAATGGTTCTTCGAGTTTTGTCGCTTTAGATAGTAAGAATATGgttgttctta ... tctttcgcagCTCAAATCACTCGACGAAGGCCACACATTCTTTCTGTTCATAAAAGGTCTT
EST: gi|60344421|gb|DN211394.1|DN211394
EST:     AAATGCGAAATGGTTCTTCGAGTTTTGTCGCTTTAGATA-----------                         CTCAAATCACTCGACGAAGGCCACACATTCTTTCTGTTCATAAAAGGTCTT
genomic: AAATGCGAAATGGTTCTTCGAGTTTTGTCGCTTTAGATAGTAAGAATATGgttgttctta ... tctttcgcagCTCAAATCACTCGACGAAGGCCACACATTCTTTCTGTTCATAAAAGGTCTT
EST: gi|78121863|gb|DV540247.1|DV540247
EST:     AAATGCGAAATGGTTCTTCGAGTTTTGTCGCTTTAGATA-----------                         CTCAAATCACTCGACGAAGGCCACACATTCTTTCTGTTCATAAAAGGTCTT
genomic: AAATGCGAAATGGTTCTTCGAGTTTTGTCGCTTTAGATAGTAAGAATATGgttgttctta ... tctttcgcagCTCAAATCACTCGACGAAGGCCACACATTCTTTCTGTTCATAAAAGGTCTT