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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTATATTTGCTTTGATGGAGCGTAGTGAGGCCGAGTTGGCAGAACCCATTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAGgtaactctaagcatcctgtagatatggttctgatttcgaattaataatttgctgctaggcttagcatatccatctaaagtattgcttgttgcttctaatt...

Basic information

species Zea mays
transcript GRMZM2G155384_T03
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155384_T03 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os02g05340.1 (Oryza sativa), 5'ss of exon 17
TATTATATTTGCTTTGATGGAGCGTAGTGAGGCCGAGTTGGCAGAACCCATTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAGgtaactct-aagcatcctgtagatatggttctgatttcgaattaataatttgctgctaggcttagca-tatccatctaaagtattgcttgttgcttctaatt
||| |||||||| ||||||||||| |||||||| ||| |||||||||||||||||||  ||||||||||||||||||| ||| | ||||||||||| ||||||  | |  |||| |||  |    | ||||   ||| || | | |  |||   |||  |   |  |  ||     ||||  |   |  ||     ||  ||
TATCATATTTGCCTTGATGGAGCGCAGTGAGGCTGAGCTGGCAGAACCCATTATACGCCTGCTTCCTGTTGCGCTTGGTCTTCTGTATCTTGGAAAGCAGgtactttttgagcaaccttgaagcttagttcc--ttttgattcattttttttgggctgtgtgcactagcatttgcttaaaaaaaatccagtattccctgctt

upper sequence: GRMZM2G155384_T03 (Zea mays), 5'ss of exon 17
lower sequence: AT2G20580.1 (Arabidopsis thaliana), 5'ss of exon 15
TATTATATTTGCTTTGATGGAGCGTAGTGAGGCCGAGTTGGCAGAACCCATTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAGgtaactctaagcatcctgta-gatatggttctgatttcgaattaataatttgctgctaggcttagc--atatccatctaaagtattgcttgttgcttctaatt
||||||||||||||||||||| || |||||||| ||  |||  ||  || | |  || ||  | ||  |||  ||||| ||| |||| || || |||||||| |  | | |  |  |  |  || | | |||   |||| ||  || |||   |||   ||||  |  | ||| |  |     | |   |             
TATTATATTTGCTTTGATGGATCGAAGTGAGGCAGAACTGGGTGATGCCCTCACTCGTTTCTTGCCACTTGGTCTTGGACTTCTATACCTGGGCAAACAGgttag-caatgtgttttacataatctcgctctttgttcgtat--atcattatttgcattgcttgaccaacatcaacttgttccaatatctaccag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32940220|gb|CF045039.1|CF045039
EST:     TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAG                         GATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
genomic: TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAGgtaactctaa ... cctatttcagGATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
EST: gi|18659836|gb|BM500547.1|BM500547
EST:     TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAG                         GATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
genomic: TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAGgtaactctaa ... cctatttcagGATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
EST: gi|32943723|gb|CF048542.1|CF048542
EST:     TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAG                         GATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
genomic: TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAGgtaactctaa ... cctatttcagGATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
EST: gi|32929231|gb|CF034043.1|CF034043
EST:     TATACGGTTGCTTCCTGAAGCAGCTTGGCCTTTTATATCTTGGAAAACAG                         GATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
genomic: TATACGGTTGCTTCCTGTTGC-GCTTGGCCTTTTATATCTTGGAAAACAGgtaactctaa ... cctatttcagGATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
EST: gi|32848175|gb|CD987856.1|CD987856
EST:     TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAG                         GATAGTGTGGAGGCTACCGCACAGGTCTCTAAAACATTTGATGAGAAGATA
genomic: TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAGgtaactctaa ... cctatttcagGATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
EST: gi|32928692|gb|CF033504.1|CF033504
EST:     TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAG                         GATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA
genomic: TTATACGGTTGCTTCCTGTTGCGCTTGGCCTTTTATATCTTGGAAAACAGgtaactctaa ... cctatttcagGATAGTGTGGAGGCTACCGCAGAGGTCTCTAAAACATTTGATGAGAAGATA