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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGGAGCAACAAGGAATAGCCGGTGTGAGTCATCACAGCCTCCTATTCTCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgttacagctttcaatattatagctattcatagattcatttcttgttactgaaagttttgagcgtgtctccagttcccttaccttgcattgatgttatgacatatttatgattgtatactgtttttacatgtag

Basic information

species Zea mays
transcript GRMZM2G138125_T01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G138125_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os04g59624.3 (Oryza sativa), 5'ss of exon 16
TTCTGGAGCAACAAGGAATAGCCGGTGTGAGTCATCACAGCCTCCTATTCTCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgttacagctttcaatattatagc-tattcatagattcatttcttgttactgaaagttttgagcgtgtctcca-gttcccttaccttgcattgatgtt--atgacatatttatgattgtatactgtttttacatgtag
| |||||||||||||| ||||| || ||||| ||||||||||| || || ||||| || |||| | | || || |||| ||| |||||||   ||||||||||| | |||| |  ||||| | |  ||| |||   |   ||  ||||     | |     | | |  |||  |  || ||  || |   ||||  | |  ||   || |  |    |||| |||| |||||| |   || ||
TCCTGGAGCAACAAGGCATAGCGGGCGTGAGCCATCACAGCCTTCTGTTTTCTAAGACAGCAATCTTACCTACACTGAATGATAATGATGGTTTGGACAGgttaattttactgtcttcaa-agtgcagcatatgtttgttttgctttcagagaaatattgatctggcacgttgcaacacgtatccatttgttgctgttacctttggtgtctaacaggtgat-gtatgctgtttctgtgtgcag

upper sequence: GRMZM2G138125_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os04g59624.2 (Oryza sativa), 5'ss of exon 17
TTCTGGAGCAACAAGGAATAGCCGGTGTGAGTCATCACAGCCTCCTATTCTCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgttacagctttcaatattatagc-tattcatagattcatttcttgttactgaaagttttgagcgtgtctcca-gttcccttaccttgcattgatgtt--atgacatatttatgattgtatactgtttttacatgtag---
| |||||||||||||| ||||| || ||||| ||||||||||| || || ||||| || |||| | | || || |||| ||| |||||||   ||||||||||| | |||| |  ||||| | |  ||| |||   |   ||  ||||     | |     | | |  |||  |  || ||  || |   ||||  | |  ||   || |  |    |||| |||| |||||| |   || ||   
TCCTGGAGCAACAAGGCATAGCGGGCGTGAGCCATCACAGCCTTCTGTTTTCTAAGACAGCAATCTTACCTACACTGAATGATAATGATGGTTTGGACAGgttaattttactgtcttcaa-agtgcagcatatgtttgttttgctttcagagaaatattgatctggcacgttgcaacacgtatccatttgttgctgttacctttggtgtctaacaggtgat-gtatgctgtttctgtgtgcagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5525254|gb|AI861093.1|AI861093
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
EST: gi|32943511|gb|CF048330.1|CF048330
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
EST: gi|67034321|gb|CO462871.1|CO462871
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
EST: gi|29130029|gb|CB380733.1|CB380733
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
EST: gi|71419756|gb|DR804887.1|DR804887
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
EST: gi|71419751|gb|DR804886.1|DR804886
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
EST: gi|31909601|gb|CD651000.1|CD651000
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
EST: gi|60355698|gb|DN222671.1|DN222671
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
EST: gi|60394842|gb|DN227711.1|DN227711
EST:     TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAG                         CAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC
genomic: TCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgtta ... ttacatgtagCAAACCTCGGGGCATGCCCATGATGCCCCAGCAATATTACAAGGGATCCTC