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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctcaactagcagtacttctgtaatttttgagtaaatgtttttcctgcagattgttttgcaatgatcaaggaaacttattaaacttctgattgt...

Basic information

species Zea mays
transcript GRMZM2G128877_T02
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128877_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 5'ss of exon 17
ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctcaactagcagtacttctgtaatttttgagtaaatgtttttcctgcagattgttttgcaatgatcaaggaaacttattaaa--cttctgattgt---
|||||||||||  ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||  |||||||  ||||   |  ||| | |||  ||||||   | |     ||| |   | | |    |      |||  |   || | |   |||   |||  ||  |   
ATATGATAAGTATTGCCCATTCTACAAATCTGTTTGGATGATGCGCAACATTATTCATTTCAACACATTGGCAACCCAGgtaaattctcttgttccaggaattcgataatttgccaat-----tttctttagaaaaccaatcctagctgactagaaaatcatgccaaaactttccaataattgt

upper sequence: GRMZM2G128877_T02 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA07G00430.1 (Glycine max), 5'ss of exon 18
ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctcaactagcagtacttctgtaatttttgagtaaatgtttttcctgcagattgttttgcaatgatcaaggaaactt----attaaacttctgattgt-
||||||||| || ||||| |||||||| || ||||||||||||||||| ||||| || ||| |||  ||||||||||||||| | |    | |   || | |   | | ||||||      | ||| | ||  | |       | || |  || | || | |    ||  |  |||   ||   
ATATGATAAATTTTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggt----agtgtaaggaatcaggcagtttttggtgttttatttatactagaaaaaagaa-gaaaagtccatgtaatcattggcatctaggttcaagttact

upper sequence: GRMZM2G128877_T02 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 18
ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctcaactagcagtacttctgtaatttttgagtaaatgtttttcctgcagattgttttgcaatgatcaaggaaactt----attaaacttctgattgt-
|||||| || |||||||| |||||||| || ||||||||||||||||| ||||| || ||| |||  ||||||||||||||| | |      |   || | |   | | ||||||      | ||| |  |  | |       | || |  || | || | |    ||  |  |||   ||   
ATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggt----ggtgtaaggaatcaggcagtttttggtgttttatttatattagaaaaaagaa-gaaaagtccatgtaatcattggcatctaggttcaagttact

upper sequence: GRMZM2G128877_T02 (Zea mays), 5'ss of exon 17
lower sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 18
ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagct-ctcaactagcagtacttctgtaatttttgagtaaatgtttttcctgcagattgttttgcaatgatcaaggaaacttattaaacttctgattgt-
|||||||||||||||||| |||||||| || ||||||||||||||||||||||| || ||| | |  ||||| ||||||||| | |  ||  ||  |  |  |||         |       | ||  |  | |   |||   |    |  ||| |    |  |  |   || ||  ||| 
ATATGATAAGTTCTGCCCCTTCTACAAGTCGGTTTGGATGATGCGCAATATTATCCATTTCTATAATTTGGCCAATCAGgtacgatgttcctctctctctctttccaccccccctcccccgtt-ttcctttttctctttgacctattgttgtcatgtttgccaag-atcattgtgtctgta

upper sequence: GRMZM2G128877_T02 (Zea mays), 5'ss of exon 17
lower sequence: PP1S8_312V6.1 (Physcomitrella patens), 5'ss of exon 18
ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctcaactagcagtacttctgtaatttttgagtaaatgtttttcctgcagattgttttgcaatgatcaaggaaacttattaaacttctga-ttgt-----------------------------------------------------------------------------------
 ||||| || ||||||||||||||||| || || ||||||||||| |||||| | |||||||||||  | |||||||||||  ||||   | |  ||  |  | | |  || ||   ||  | ||  ||||      | ||||| | ||||  |  ||  || |||||  | ||| ||||                                                                                   
TTATGACAAATTCTGCCCATTCTACAAGTCTGTGTGGATGATGCGTAATATTGTCCACTTCAACACTCTTGCAAATCAGgtttgctcgttattc-caaaatgtttttgtttattatttatcttttcctcct-----cttttttgaattgattcattaa-tttgttaaatctttgagttgttcaaattttgatgattgggtggttgtatctcaactcgtatgtttacaaattccaaaactaatgagcgatgatttcatctgcag

upper sequence: GRMZM2G128877_T02 (Zea mays), 5'ss of exon 17
lower sequence: PP1S44_102V6.1 (Physcomitrella patens), 5'ss of exon 18
ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctcaactagcagtacttctgtaatttttgagtaaatgtttttcctgcagattgtttt-gcaatgatcaaggaaacttat-taaacttctgattgt---
 |||||||| || |||||||| || || || || |||||||||||||| ||| | |||||||||||  | || ||||||||    | |   | |  | |  |  |||      | ||| |  |||||   ||    ||||||| |   |||    |   | || | |  | |   |   |    
TTATGATAAATTTTGCCCATTTTATAAGTCGGTGTGGATGATGCGCAACATTGTCCACTTCAACACTCTTGCCAATCAGgtctcgttttgcccataaattttaatgtg---catcagtta--gttttgtttgttacttgttttagtggtgaatgtgatgatttttatgtattctcgcacggaat

upper sequence: GRMZM2G128877_T02 (Zea mays), 5'ss of exon 17
lower sequence: PP1S10_201V6.1 (Physcomitrella patens), 5'ss of exon 18
ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctcaactagcagtacttctgtaatttttgagtaaatgtttttcctgcag--attgttttgcaatgatcaaggaaacttattaaacttctgattgt
 ||||||||||||||||||||||| ||||| || |||||||||||||||||| | ||||| |||||  | || ||||||||         ||| | | |  | |||||   || |  | || |||||||| |     | || | | |||| |       |  |  | |      || ||  
TTATGATAAGTTCTGCCCATTCTATAAATCAGTATGGATGATGCGCAATATTGTCCACTTTAACACTCTTGCCAATCAGgtctttctctcactcg-attcttactgtacagttggcatcaa-gtttttccggtcattactgctcttcaattagttgttcatatcttgatcaacatgtttac

upper sequence: GRMZM2G128877_T02 (Zea mays), 5'ss of exon 17
lower sequence: EFJ33015 (Selaginella moellendorffii), 5'ss of exon 17
ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctcaactagcagtacttctgtaatttttgagtaaatgt---ttttcctgcagattgttttgcaatgatcaaggaaacttattaaacttctgattgt
||| |||||||| || || |||||||| ||||||||||||||||| || ||  |||| |||  |    || | | ||||||| || ||      ||  ||| ||| | |  |    | |||| |   || || |||||                                            
ATACGATAAGTTTTGTCCGTTCTACAAGTCCGTTTGGATGATGCGAAACATCGTTCATTTCTGCGACCTGTCCACTCAGgtatgcact------gccatacctctttcacgtccttgaaaatttactttctcttgcag--------------------------------------------

upper sequence: GRMZM2G128877_T02 (Zea mays), 5'ss of exon 17
lower sequence: EFJ30330 (Selaginella moellendorffii), 5'ss of exon 18
ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctcaactagcagtacttctgtaatttttgagtaaatgtttttcctgcagattgttttgcaatgatcaaggaaacttattaaacttctgattgt
||| |||||||| || || |||||||| ||||||||||||||||| || ||  | || |||  |    || | | ||||||| || ||   | |  |   |||        ||  | |     ||| || |||||                                            
ATACGATAAGTTTTGTCCGTTCTACAAGTCCGTTTGGATGATGCGAAACATCGTCCATTTCTGCGACCTGTCCACTCAGgtatgcact--gcca-tacctctttcacgtccttgaaattttactttctcttgcag--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929207|gb|CF034019.1|CF034019
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTA
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTA
EST: gi|60338201|gb|DN205174.1|DN205174
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|5770168|gb|AI973342.1|AI973342
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|13149764|gb|BG320086.1|BG320086
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|32831320|gb|CD970998.1|CD970998
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGT
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGT
EST: gi|67018748|gb|CO447497.1|CO447497
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|4646572|gb|AI491316.2|AI491316
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|32928400|gb|CF033212.1|CF033212
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTA
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTA
EST: gi|32837774|gb|CD977452.1|CD977452
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTAC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTAC
EST: gi|5296280|gb|AI783050.1|AI783050
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|5846764|gb|AI999847.1|AI999847
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|32939925|gb|CF044744.1|CF044744
EST:     CCGTTTGGATGATGC-CAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|211152801|gb|FL123511.1|FL123511
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|5871663|gb|AW018134.1|AW018134
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|4630580|gb|AI621454.1|AI621454
EST:     ATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: ATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|5847131|gb|AW000210.1|AW000210
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|5762082|gb|AI967130.1|AI967130
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|5804554|gb|AI979524.1|AI979524
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|33092495|gb|CF052489.1|CF052489
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGT
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGT
EST: gi|5846817|gb|AI999900.1|AI999900
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|4572998|gb|AI586647.1|AI586647
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|5846863|gb|AI999946.1|AI999946
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|67040096|gb|CO466351.1|CO466351
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|149076737|gb|EE165383.2|EE165383
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|32836684|gb|CD976362.1|CD976362
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGT
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGT
EST: gi|83278503|gb|DV942511.1|DV942511
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|5343199|gb|AI795384.1|AI795384
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|5762132|gb|AI967180.1|AI967180
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|5296225|gb|AI782905.1|AI782905
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|5325051|gb|AI783242.1|AI783242
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|211156008|gb|FL123543.1|FL123543
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|32910829|gb|CF015641.1|CF015641
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|67025855|gb|CO454604.1|CO454604
EST:     CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: CCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
EST: gi|61236472|gb|DN586224.1|DN586224
EST:     TGGC-AATCAG                         GCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC
genomic: TGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 508

ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 782

ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 685

ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 726

ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAGgtaagctctc ... ttgtttgtagGCTGTGGAGCGGGCAGCTGGTACTGATGGCCAAAAGATAACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT