Sequence
atgc intronic sequence ATGC exonic sequenceGCTAGAGGGAATGCAATTCTACAGGCGAGTTTGGAAAGAAGAAAACAAGCGCTACATGAACGCAGATTGGCTTTGGAACAGGATgtatgtaccatttccttgtcttgtcagtttgcttatccgtgatttgttttttagaaacttttaagaatgaaagtattccctccattccaaattgtaattc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G115975_T01 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os03g24180.1 (Oryza sativa), 5'ss of exon 17
GCTAGAGGGAATGCAATTCTACAGGCGAGTTTGGAAAGAAGAAAACAAGCGCTACATGAACGCAGATTGGCTTTGGAACAGGATgtatgtaccatttccttgtcttgtcag-tttgcttatccgtga----tttgttttttagaaacttttaagaatgaaagtattccctccattccaaattgtaattc
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GCTAGGGGTAATGCAATTCTACAGGCAAGTTTGGAAAGAAGGAAACAAGCACTGCATGAACGTCGTTTGGCCCTGGAACAGGATgtatgttgcattcccttgtaccatcaaatttgcttggtcgtcaagtgcatatgttttactatagtatattggggaaag-atacccttttttt----ttgtccctt
upper sequence: GRMZM2G115975_T01 (Zea mays), 5'ss of exon 17
lower sequence: PP1S271_62V6.1 (Physcomitrella patens), 5'ss of exon 17
GCTAGAGGGAATGCAATTCTACAGGCGAGTTTGGAAAGAAGAAAACAAGCGCTACATGAACGCAGATTGGCTTTGGAACAGGATgtatgtaccatttccttgtcttgtcagtttgct-----tatccgtgatttgtttttt--agaaact-tttaagaatgaaagtattccctccattccaaattgtaattc----------------------------------------
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GCAAAAGGAAATGCAATTTTACAAGCTAGTTTGGAAAGAAGAAAGCAAGCTCTACATGACCGTCGGCTGGCCCTTGAACAAGATgtatgtgtatccatcccggttcatttgcatgagggaaatgcacttcattggatatcccaagcggttattttagtataagtgtcatcgcattatccctcctctgagtaggccatatgcctgtcatttggggatgtttctgtacgttcag
upper sequence: GRMZM2G115975_T01 (Zea mays), 5'ss of exon 17
lower sequence: PP1S78_26V6.1 (Physcomitrella patens), 5'ss of exon 16
GCTAGAGGGAATGCAATTCTACAGGCGAGTTTGGAAAGAAGAAAACAAGCGCTACATGAACGCAGATTGGCTTTGGAACAGGATgtatgtaccatttccttgtcttgtcagtttgcttatccgtgatttgttttttagaaacttttaagaat---gaaagtattccctccattccaaattgtaattc-----------------------------------------------------------
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GCGAAAGGGAATGCAATTTTACAAGCTAGCTTGGAAAGAAGAAAGCAAGCTTTACATGACCGTCGTCTGGCCCTTGAACAAGATgtaag---cgtatccat-cctagaccctttgaccaaggaaaatgattttctttgtgtatttcaagacttgcaagattagttattgtaatgcaggttgccacgttgtccttgcccttattcaggtttttacaattattttattttattttattttttgttcag
upper sequence: GRMZM2G115975_T01 (Zea mays), 5'ss of exon 17
lower sequence: EFJ24423 (Selaginella moellendorffii), 5'ss of exon 16
GCTAGAGGGAATGCAATTCTACAGGCGAGTTTGGAAAGAAGAAAACAAGCGCTACATGAACGCAGATTGGCTTTGGAACAGGATgtatgtaccatttccttgtcttgtcagtttgcttatccgtgatttgttttttagaaacttttaagaatgaaagtattccctccattccaaattgtaattc
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GCTAAAGGAAATGCAATTCTTCAAGCGAGTTTGGAAAGACGAAAGCAAGCACTTCATGATCGCCGGCTCGCTCTTGAACAAGACgtatgc-tcgtgctattttcctttc--cttttttat--gagattttgacttcaaa---ttgtaaacaccag-----------------------------
upper sequence: GRMZM2G115975_T01 (Zea mays), 5'ss of exon 17
lower sequence: EFJ23838 (Selaginella moellendorffii), 5'ss of exon 16
GCTAGAGGGAATGCAATTCTACAGGCGAGTTTGGAAAGAAGAAAACAAGCGCTACATGAACGCAGATTGGCTTTGGAACAGGATgtatgtaccatttccttgtcttgtcagtttgcttatccgtgatttgttttttagaaacttttaagaatgaaagtattccctccattccaaattgtaattc
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GCTAAAGGAAATGCAATTCTTCAAGCGAGTTTGGAAAGACGAAAGCAAGCACTTCACGATCGCCGGCTCGCTCTTGAACAGGACgtatgc-tcgtgctattttcctttc--cttttttat--gagattttgacttcaaa---ttgtaaacaccag-----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60396241|gb|DN229110.1|DN229110EST: AAAGAAGAAAACAAGCGCTACATGAACGCAGATTGGCTTTGGAACAGGAT GTCTCCAGGTTGCAAGAACAACTGCAAGCTGAAAGGGATCTGCGAGCTGCA
genomic: AAAGAAGAAAACAAGCGCTACATGAACGCAGATTGGCTTTGGAACAGGATgtatgtacca ... ataattgtagGTCTCCAGGTTGCAAGAACAACTGCAAGCTGAAAGGGATCTGCGAGCTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTAGAGGGAATGCAATTCTACAGGCGAGTTTGGAAAGAAGAAAACAAGCGCTACATGAACGCAGATTGGCTTTGGAACAGGATgtatgtaccatttccttgtcttgtcagtttgcttatccgtgatttgttttttagaaacttttaagaatgaaagtattccctccattccaaattgtaattc
- - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT