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GGAGGCTCTCCGGTATCATAAGATAGTTATACTTACTGACGCTGATGTTGATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAAgtacgtaccaagaatcatctgcacactgaagagtatacctcatctgttagattcttcatttataagtgtgtaccaagagggacctgtaaactgaagagta...
species | Zea mays |
transcript | GRMZM2G111014_T01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAA AGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTACEST: gi|60355485|gb|DN222458.1|DN222458
genomic: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAAgtacgtacca ... cgatctgcagAGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTAC
EST: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAA AGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTACEST: gi|61118878|gb|DN559839.1|DN559839
genomic: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAAgtacgtacca ... cgatctgcagAGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTAC
EST: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAA AGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTACEST: gi|211355118|gb|FL475423.1|FL475423
genomic: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAAgtacgtacca ... cgatctgcagAGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTAC
EST: CCTTACTTTTTTCTTTCAGATATCAA AGAGCATTATTTGATGAAGGTTGCATCTACGTTAGTGTACCTCCTCTTTACEST: gi|26457554|gb|CA829137.1|CA829137
genomic: CCTTACTTTCTTC-TTCAGATATCAAgtacgtacca ... cgatctgcagAGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTAC
EST: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAA AGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTACEST: gi|60348992|gb|DN215965.1|DN215965
genomic: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAAgtacgtacca ... cgatctgcagAGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTAC
EST: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAA AGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTACEST: gi|26559423|gb|CA831658.1|CA831658
genomic: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAAgtacgtacca ... cgatctgcagAGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTAC
EST: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAA AGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTACEST: gi|149070380|gb|EE158779.2|EE158779
genomic: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAAgtacgtacca ... cgatctgcagAGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTAC
EST: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAA AGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTACEST: gi|22715431|gb|BU197759.1|BU197759
genomic: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAAgtacgtacca ... cgatctgcagAGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTAC
EST: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAA AGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTACEST: gi|60394461|gb|DN227331.1|DN227331
genomic: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAAgtacgtacca ... cgatctgcagAGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTAC
EST: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAA AGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTACEST: gi|87157849|gb|DY402638.1|DY402638
genomic: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAAgtacgtacca ... cgatctgcagAGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTAC
EST: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAA AGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTAC
genomic: ATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAAgtacgtacca ... cgatctgcagAGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGCTCTCCGGTATCATAAGATAGTTATACTTACTGACGCTGATGTTGATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAAgtacgtaccaagaatcatctgcacactgaagagtatacctcatctgttagattcttcatttataagtgtgtaccaagagggacctgtaaactgaagagta
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC