Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGAGTCCCATTGGAGGCATGCTTGTCAAGTTTTTCAGGGCCAGAGGAGATTCCAGATTTTTATAGCACTGCATTAAATTCAAAGACTACCGTCACTAAgtatgcacaatttgagctctacaatttaggatagcatggcataaagttctcatatcaaagagcaatacttgttgctatttgctaaattctcttttcgaac...

Basic information

species Zea mays
transcript GRMZM2G107696_T02
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107696_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os01g08200.1 (Oryza sativa), 5'ss of exon 13
CTAGAGTCCCATTGGAGGCATGCTTGTCAAGTTTTTCAGGGCCAGAGGAGATTCCAGATTTTTATAGCACTGCATTAAATTCAAAGACTACCGTCACTAAgtatgcacaatttga----------gctctacaattta--ggatagcatggcataaagttctcatatcaaagagcaatacttgttgctatttgctaaattctcttttcgaac
||||||||||| |||||||||||||  |||||||||||||  | |||||  | || || ||||| ||||||||||| ||||||||||| || |  | |||||||||| |  || |          | ||||  || ||   |  |   ||| | |   || |    | ||  || |||| ||     |    || ||| ||           
CTAGAGTCCCACTGGAGGCATGCTTAGCAAGTTTTTCAGGCGCGGAGGAAGTGCCTGAATTTTACAGCACTGCATTGAATTCAAAGACAACAGCAATTAAgtatgcatatcttcattgccatttggttctattatatacatggaaatgtggtacagccttattgattgaataagaaatatttcaaaatgcaagc-aaactc-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211494928|gb|FL217185.1|FL217185
EST:     GCATTAAATTTAAAGACTACCGTCACTAA                         GACAGCTGGTTTCAATACCTTTCCTGATCACCTTGTGCTGCACATGCGTAA
genomic: GCATTAAATTCAAAGACTACCGTCACTAAgtatgcacaa ... tttcatgcagGACAGCTGGTTTCACTACCTTTCCTGATTACCTTGTGCTGCACATGCGTAA
EST: gi|71330491|gb|DR802012.1|DR802012
EST:     ATTCCAGATTTTTATAGCACTGCATTAAATTCAAAGACTACCGTCACTAA                         GACAGCTGGTTTCACTACCTTTCCTGATTACCTTGTGCTGCACATGCGTAA
genomic: ATTCCAGATTTTTATAGCACTGCATTAAATTCAAAGACTACCGTCACTAAgtatgcacaa ... tttcatgcagGACAGCTGGTTTCACTACCTTTCCTGATTACCTTGTGCTGCACATGCGTAA
EST: gi|31361116|gb|CD445473.1|CD445473
EST:     ATTCCAGATTTTTATAGCACTGCATTAAATTCAAAGACTACCGTCACTAA                         GACAGCTGGTTTCACTACCTTTCCTGATTACCTTGTGCTGCACATGCGTAA
genomic: ATTCCAGATTTTTATAGCACTGCATTAAATTCAAAGACTACCGTCACTAAgtatgcacaa ... tttcatgcagGACAGCTGGTTTCACTACCTTTCCTGATTACCTTGTGCTGCACATGCGTAA
EST: gi|20300736|gb|BQ163679.1|BQ163679
EST:     ATTCCAGATTTTTATAGCACTGCATTAAATTCAAAGACTACAGTCACTAA                         GACAGCTGGTTTCAATACCTTTCCTGATTACCTTGTGCTGCACATGCGTAA
genomic: ATTCCAGATTTTTATAGCACTGCATTAAATTCAAAGACTACCGTCACTAAgtatgcacaa ... tttcatgcagGACAGCTGGTTTCACTACCTTTCCTGATTACCTTGTGCTGCACATGCGTAA
EST: gi|44682206|gb|CK787254.1|CK787254
EST:     ATTCCAGATTTTTATAGCACTGCATTAAATTCAAAGACTACCGTCACTAA                         GACAGCTGGTTTCACTACCTTTCCTGATTACCTTGTGCTGCACATGCGTAA
genomic: ATTCCAGATTTTTATAGCACTGCATTAAATTCAAAGACTACCGTCACTAAgtatgcacaa ... tttcatgcagGACAGCTGGTTTCACTACCTTTCCTGATTACCTTGTGCTGCACATGCGTAA