1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCGAACTGGCTGACAGCATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcctttctttttccattctctccctcccttcaagaacgtgtttcccattgcgacgttggatctaaccgtgtgtcttggtttgaccag
species | Zea mays |
transcript | GRMZM2G097768_T03 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|21236535|gb|BQ441989.1|BQ441989
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: TGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|211113971|gb|FL431731.1|FL431731
genomic: TGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACATTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|101389585|gb|EB816725.1|EB816725
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACCTTTGCTATTTACGCCGTCGTGTTTACCATGGCCCTCATTTTCGTGTEST: gi|18166608|gb|BM336447.1|BM336447
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|26455414|gb|CA826997.1|CA826997
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|71766861|gb|DR964798.1|DR964798
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|211126445|gb|FL284300.1|FL284300
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACATTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|193503179|gb|AM937591.1|AM937591
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACATTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|211440838|gb|FL476613.1|FL476613
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACATTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|67016921|gb|CO445670.1|CO445670
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACATTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|149077603|gb|EE166303.2|EE166303
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|6563963|gb|AW231585.1|AW231585
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACATTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|87154157|gb|DY398946.1|DY398946
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|50325332|gb|CO520458.1|CO520458
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACCTTTGCTATTTACGCCGTCGTGTTTACCATGGCCCTCATTTTCGTGTEST: gi|409675|gb|T12737.1|T12737
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|26455008|gb|CA826591.1|CA826591
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|193503551|gb|AM937740.1|AM937740
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACATTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|37374223|gb|CF623456.1|CF623456
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACATTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|83279317|gb|DV943325.1|DV943325
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACATTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGTEST: gi|50325565|gb|CO520691.1|CO520691
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
EST: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAG GAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
genomic: ATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcct ... gtttgaccagGAACCTTTGCTATCTACGCCGTCGTGTCTACCATGGCCCTCATTTTCGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAAGAGCCTTGCTGGAAGTGTTGCGACCCTGGCGAACTGGCTGACAGCATGGGCCATTACAATGACGGCAAGCCTGATGTTGAACTGGAGCAGTGGAGgtctcttcctttctttttccattctctccctcccttcaagaacgtgtttcccattgcgacgttggatctaaccgtgtgtcttggtttgaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG