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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTTTTCGATTACAAGCATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccctatgtgcaaggattaaatatttctttcctcctttttcccctgagaacatgcaatgcaatgtattgggtttgtttggtttcaagttgtttcttgtacatggaacccctttcgcctcttccattaaaatatttattcctctatgactgcag

Basic information

species Zea mays
transcript GRMZM2G096553_T02
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096553_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os05g43374.1 (Oryza sativa), 5'ss of exon 12
-------------------------------GGAGTTTTCGATTACAAGCATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccctatgtgcaaggattaaatatttctttcctcctttttcccctgagaacatgcaatgcaatgtattgggtttgtttggtttcaagttgtttcttgtacatggaacccctttcgcctcttccattaaaatatttattcctctatgactgcag
                               ||||||||| ||||||||||||||||| ||||| || || ||||||||||||||||||| ||||||||||||||  || |||        ||| |      |||| | | |  ||      |||  |   ||  ||     ||    || ||| || | ||     |||| |                  ||| ||||| ||||| ||    |    | |||||| ||
TATGCTATATGATACAAACTCCATTTTTAAGGGAGTTTTCAATTACAAGCATGAAAGGAGGTTATCGGCGGGTGTTCCAGCGGCCTATTGATTTTGAGTGgtatg--ccttatccc-----attga------cttttcacttcatt------agatgaccaaaatcatcacctt----ttctttcgtataaa-----ttctagc-----------------cctgttccactaaaaaat--gctttggtgtgactgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67025158|gb|CO453907.1|CO453907
EST:     ATGAAAGGTGGTTACCGTCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTG                         GGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
genomic: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccc ... atgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
EST: gi|60347237|gb|DN214210.1|DN214210
EST:     ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTG                         GGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
genomic: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccc ... atgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
EST: gi|86465812|gb|DY232185.1|DY232185
EST:     ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTG                         GGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
genomic: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccc ... atgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
EST: gi|13149317|gb|BG319639.1|BG319639
EST:     ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTG                         GGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
genomic: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccc ... atgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
EST: gi|60397731|gb|DN230547.1|DN230547
EST:     ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTG                         GGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
genomic: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccc ... atgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
EST: gi|60349430|gb|DN216403.1|DN216403
EST:     ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTG                         GGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
genomic: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccc ... atgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
EST: gi|71773678|gb|DR971575.1|DR971575
EST:     ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTG                         GGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
genomic: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccc ... atgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
EST: gi|6031366|gb|AW076223.1|AW076223
EST:     ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTG                         GGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT
genomic: ATGAAAGGTGGTTACCGCCGAGTGTTCCAGCGGCCTATTGGTTTTGAGTGgtatgtaccc ... atgactgcagGGAACTCATAACTTACACAGATGATACTTCATCTTTAGCAGAAACTGATTT