1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGGgtaactggaaacacattaagacccactgaacttttcccatgcagaggtttttaaactggaatttttgttctgtgatgttag
species | Zea mays |
transcript | GRMZM2G081682_T02 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GAATGGACACCCTGGCACGTGGCCTTCGTAACGTTGCCAAGCTGATTGAG GATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGTEST: gi|33101487|gb|CF061447.1|CF061447
genomic: GAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGGgtaactggaa ... gtgatgttagGATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGT
EST: GAATGGACACCCTGGCACGTGGCCTTCGTAACGTTGCCAAGCTGATTGAG GATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGTEST: gi|5739589|gb|AI947384.1|AI947384
genomic: GAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGGgtaactggaa ... gtgatgttagGATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGT
EST: CCTGGCACGTGGCCTTCGTAACGTTGCCAAGCTGATTGAG GATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGTEST: gi|60347665|gb|DN214638.1|DN214638
genomic: CCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGGgtaactggaa ... gtgatgttagGATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGT
EST: GAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGG GATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGTEST: gi|21331635|gb|BQ487016.1|BQ487016
genomic: GAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGGgtaactggaa ... gtgatgttagGATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGT
EST: GAATGGACACCCTGGCACGTGGCCTTCGTAACGTTGCCAAGCTGATTGAG GATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGTEST: gi|32909378|gb|CF014190.1|CF014190
genomic: GAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGGgtaactggaa ... gtgatgttagGATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGT
EST: GAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGG GATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGTEST: gi|22715088|gb|BU197571.1|BU197571
genomic: GAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGGgtaactggaa ... gtgatgttagGATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGT
EST: GAATGGACACCCTGGCACGTGGCCTTCGTAACGTTGCCAAGCTGATTGAG GATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGTEST: gi|60397236|gb|DN230052.1|DN230052
genomic: GAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGGgtaactggaa ... gtgatgttagGATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGT
EST: GAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGG GATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGTEST: gi|6095640|gb|AW120307.1|AW120307
genomic: GAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGGgtaactggaa ... gtgatgttagGATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGT
EST: GAATGGACACCCTGGCACGTGGCCTTCGTAACGTTGCCAAGCTGATTGAG GATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGTEST: gi|9794851|gb|BE553159.1|BE553159
genomic: GAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGGgtaactggaa ... gtgatgttagGATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGT
EST: GAATGGACACCCTGGCACGTGGCCTTCGTAACGTTGCCAAGCTGATTGAG GATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGTEST: gi|5804468|gb|AI979438.1|AI979438
genomic: GAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGGgtaactggaa ... gtgatgttagGATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGT
EST: GAATGGCCCCCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGG GATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGT
genomic: GAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGGgtaactggaa ... gtgatgttagGATGGTTCCCTAGATGATCTTGTCCGCAAGCGGTACCAGAGCTTTGATAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGGAATGGACACCCTGGCACGTGGCCTCCGTAACGTTGCCAAGCTGATTGGGgtaactggaaacacattaagacccactgaacttttcccatgcagaggtttttaaactggaatttttgttctgtgatgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT