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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtaccttttgtcatatgtttcttgttctgtggaaaaattggaattgaaccaacatgggattcttttgtgataacag

Basic information

species Zea mays
transcript GRMZM2G081682_T01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081682_T01 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os07g47290.1 (Oryza sativa), 5'ss of exon 17
GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtaccttttgtcatatgtttcttgttctgtg-----gaaaa---------------attggaattgaaccaacatgggattcttttgtgataacag
||||| |||||||||||||| ||||||||||||||||||||||  || ||   || |||   ||| || || ||||     | |||               | || | || ||   || ||| ||||| || ||  |||||
GGTGGGCTTGCACCTGGTGGATTCAACTTTGATGCCAAATTgttggttcccgctgacattgttttttttttttgtgtgtgtgtaaattggtctctgattcaactgaatttcaattgacttggaattctattatgtcaacag

upper sequence: GRMZM2G081682_T01 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA17G07380.1 (Glycine max), 5'ss of exon 17
GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtaccttttgtcatatgtttcttgttctgtggaaaaattggaattgaaccaacatgggattcttttgtgataacag--------
|| ||||||||||| ||||| |||||||| ||||| ||||||||||| | | |     ||| ||| |     |||       || |  ||   ||  |      ||  | |    || ||         
GGAGGACTTGCACCCGGTGGATTCAACTTCGATGCGAAATTgtcagtccttctc----tatctttatatacttgtattcctgtttgttttattccccccctcagtttctgtact-tagcaatgttatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32908733|gb|CF013546.1|CF013546
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|211073602|gb|FL380705.1|FL380705
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGTCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|5762062|gb|AI967110.1|AI967110
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|24764290|gb|CA399456.1|CA399456
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|211046951|gb|FL455967.1|FL455967
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGTCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|6095640|gb|AW120307.1|AW120307
EST:     GGTGGCCTTGCACCTGGTGGTTTCANACTTTAATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCA-ACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|4688570|gb|AI637240.1|AI637240
EST:     GGTGGACTTGCNCCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|26559536|gb|CA831771.1|CA831771
EST:     GGTGGACTTGCACCTGG-GGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|9794851|gb|BE553159.1|BE553159
EST:     TGGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: TGGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|32916469|gb|CF021281.1|CF021281
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|6194746|gb|AW146850.1|AW146850
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|87155905|gb|DY400694.1|DY400694
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|211046948|gb|FL455964.1|FL455964
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGTCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|7145170|gb|AW506651.1|AW506651
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|21389890|gb|BQ527939.1|BQ527939
EST:     GTTAAGAATGGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GTTAAGAATGGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|211046950|gb|FL455966.1|FL455966
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGTCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|32866939|gb|CF006621.1|CF006621
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|33104022|gb|CF063982.1|CF063982
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGT
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGT
EST: gi|74232803|gb|DT640717.1|DT640717
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|60358930|gb|DN225903.1|DN225903
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|22715090|gb|BU197572.1|BU197572
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|22715088|gb|BU197571.1|BU197571
EST:     GGTGGACTTGCCCCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|60398484|gb|DN231300.1|DN231300
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|211313620|gb|FL416741.1|FL416741
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|32909378|gb|CF014190.1|CF014190
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|31250143|gb|CD219167.1|CD219167
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|21331635|gb|BQ487016.1|BQ487016
EST:     GGTGGACTTGCACCTGGTGGTTTCAACCTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|76014001|gb|DT941171.1|DT941171
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|211371193|gb|FL385803.1|FL385803
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG
EST: gi|211434578|gb|FL418942.1|FL418942
EST:     GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATT                         GCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGTCCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtacct ... gtgataacagGCGGAGGGAAAGTACTGATGTTGAGGACATGTTTCTTGCCCATATCTCCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTGGACTTGCACCTGGTGGTTTCAACTTTGATGCCAAATTgtcagtaccttttgtcatatgtttcttgttctgtggaaaaattggaattgaaccaacatgggattcttttgtgataacag

- - - - - - - TGGTGG