1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
AAGTGGGCTCCAGGCCAGTATCAACGCTCTGGGATCAACCGCCACTGTTCTCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgcccctttgtttgcgcttattacctgcgtctgtgtgtgcctgaatggtcatatgtttctcagcgcatatttgtgctctgttttcggtttcgatcttgtgattctgaatgcgaaacctgacggtgaacaattgcgcggcag
species | Zea mays |
transcript | GRMZM2G077299_T01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32915958|gb|CF020770.1|CF020770
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32866815|gb|CF006497.1|CF006497
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|12045666|gb|BF727805.1|BF727805
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: AAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATTTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32834805|gb|CD974483.1|CD974483
genomic: AAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32832616|gb|CD972294.1|CD972294
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32838656|gb|CD978334.1|CD978334
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32846404|gb|CD986085.1|CD986085
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGTGTAA-GAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTEST: gi|32866647|gb|CF006329.1|CF006329
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCG-GTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGT
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32915959|gb|CF020771.1|CF020771
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|213175520|gb|FM193176.1|FM193176
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|31351830|gb|CD436187.1|CD436187
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32867628|gb|CF007310.1|CF007310
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: GTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32836113|gb|CD975791.1|CD975791
genomic: GTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGEST: gi|32846779|gb|CD986460.1|CD986460
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAG
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32833806|gb|CD973484.1|CD973484
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32846254|gb|CD985935.1|CD985935
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|78108891|gb|DV527308.1|DV527308
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32847472|gb|CD987153.1|CD987153
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|74232032|gb|DT639946.1|DT639946
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32846575|gb|CD986256.1|CD986256
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCEST: gi|71769432|gb|DR967369.1|DR967369
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGC
EST: TCACATCAGCAGATGTGAGGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATTTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32847067|gb|CD986748.1|CD986748
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCEST: gi|32833492|gb|CD973170.1|CD973170
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32833419|gb|CD973097.1|CD973097
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32866646|gb|CF006328.1|CF006328
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32832289|gb|CD971967.1|CD971967
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTNCTTCAGCAACCCAACCAAG GTTGTGCCG-TAAAGAGCGATCTEST: gi|32834130|gb|CD973808.1|CD973808
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCT
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32847619|gb|CD987300.1|CD987300
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32847649|gb|CD987330.1|CD987330
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTEST: gi|32846820|gb|CD986501.1|CD986501
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGT
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTCEST: gi|32832861|gb|CD972539.1|CD972539
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
EST: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAG GTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
genomic: TCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgc ... tgcgcggcagGTTGTGCCGGTAAAGAGCGATCTGAGCAATGCTGCAGAGCAGATGCAGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTGGGCTCCAGGCCAGTATCAACGCTCTGGGATCAACCGCCACTGTTCTCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgcccctttgtttgcgcttattacctgcgtctgtgtgtgcctgaatggtcatatgtttctcagcgcatatttgtgctctgttttcggtttcgatcttgtgattctgaatgcgaaacctgacggtgaacaattgcgcggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA