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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCGTGGGATAGCATTACATAAAATGATTAGGCTTGTCACAATGGGTTTAGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttctcaattttattgcatgttgcataatgcatagttacgagttataatgtttttggtccttgcatggcatgcagcctaattcatcagtggaggaagttatgactagtttcattttacgtggcag

Basic information

species Zea mays
transcript GRMZM2G073054_T02
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA03G35020.1 (Glycine max), 5'ss of exon 17
GATCGTGGGATAGCATTACATAAAATGATTAGGCTTGTCACAATGGGTTTAGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttctcaattttattgcatgttgcataatgcatagttacgagttataatgtttttggtccttgcatggcatgcagcctaattcatcagtggaggaagttatgactagtttcattttacgtggcag
|||||||| ||||| || || ||||||||||||||| | || |||||| | || |||||||| ||| ||||||| ||||| ||||| ||||| ||||||||| |   |  |  | ||| |  |||||  ||| |   | || | | | | || || |     ||  ||  ||   |||    | | || |    | |      | ||   | ||| |  | | |       
GATCGTGGTATAGCGTTGCACAAAATGATTAGGCTTATTACCATGGGTCTTGGTGGTGAAGGGTATTTAAATTTTATGGGGAATGAATTTGGCCATCCTGgtaatcatatttgacttt-tgtcatgt--cattacttagagattcaa-taatgatatgaccagttgttagattttatgttatcaagttaagtt-tagcattgctcattcattgttgctctcttcag-----

upper sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA19G37750.2 (Glycine max), 5'ss of exon 17
GATCGTGGGATAGCATTACATAAAATGATTAGGCTTGTCACAATGGGTTTAGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttctcaattttattgcatgttgcataatgcatagttacg-agttataatgtttttggtcc--ttgcatggcatgcagcctaattcatcagtggaggaa-gttatgactagtttcattttacgtggcag
|||||||| ||||| || || ||||||||||||||| | || |||||  | || |||||||| ||| ||||||| ||||| ||||| || || ||||||||| | || | |     || |  |||||       | | |||  |   | | || || |     ||    ||  ||   ||  ||   | || | || ||        || |  ||   ||||             
GATCGTGGTATAGCGTTGCACAAAATGATTAGGCTTATTACCATGGGCCTTGGTGGTGAAGGGTATTTAAATTTTATGGGGAATGAATTCGGCCATCCTGgt-aatcatatttgacttgtgtcatgtcattacttacgtagagattcaataatgatatgaccagttagattttatattatcaagttaagtttagcattgctcattcattgttgctcacttcag------------

upper sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 17
lower sequence: AT5G03650.1 (Arabidopsis thaliana), 5'ss of exon 17
GATCGTGGGATAGCATTACATAAAATGATTAGGCTTGTCACAATGGGTTTAGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttctcaattttattgcatgttgcataatgcatagttacgagttataatgtttttggtccttgcatggcatgcagcctaattcatcagtggaggaagttatgactagtttcattttacgtggcag
||| | || ||||| || || ||||||||||||||| | || ||||| ||||| |||||||| ||  ||||||| |||||||| || || || ||||| |||        || |||| |     | |    || |   |    |  | || | | || |    |   | |||    | | ||   |||||                                         
GATAGAGGAATAGCTTTGCACAAAATGATTAGGCTTATAACTATGGGATTAGGCGGTGAAGGTTACTTAAATTTTATGGGAAACGAATTCGGACATCCAGgt--actaaatcgatttaagcttgtttcatttactttctgtgcaaaaattttga-gtgtacaatttcttcatctactcctgcaatattcag----------------------------------------

upper sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 17
lower sequence: Vv08s0007g03750.t01 (Vitis vinifera), 5'ss of exon 17
GATCGTGGGATAGCATTACATAAAATGATTAGGCTTGTCACAATGGGTTTAGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttctcaatt--ttattgcatgttgcataatgcatagttacgagttataatgtttttggtccttgcatggcatgcagcctaattcatcagtggaggaagttatgactagtttcattttacgtggcag
|||||||| ||||||||||| |||||||| || ||| | || ||||| ||||| || ||||| || || |||||||||||||| || ||||| ||||||||| |        | |   |||||  || ||||||    || ||| | || |  |  |  | ||  |  |     |  ||  |   |  |  |||||| | |    || |  |     | ||||    |  |||
GATCGTGGAATAGCATTACACAAAATGATCAGACTTATTACCATGGGCTTAGGGGGAGAAGGATACCTGAATTTCATGGGAAACGAATTTGGACATCCTGgtaaaagaataaagtcaattattttat-ttgcatt-cccaaagtaatgattcttgctagtgtttata-tcattcgaaatatatttt--tgaatcagttgtgattatt-tatcctacgttatttcttttatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32836879|gb|CD976557.1|CD976557
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|32934500|gb|CF039312.1|CF039312
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCC
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTC-
EST: gi|60338294|gb|DN205267.1|DN205267
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|32837113|gb|CD976791.1|CD976791
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|32920624|gb|CF025436.1|CF025436
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAAGTCTTCCAAATGGCTCCGTC
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTC-AAAGTCTTCCAAATGGCTCCGTC
EST: gi|60394366|gb|DN227236.1|DN227236
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|60345781|gb|DN212754.1|DN212754
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|211026372|gb|FL004586.1|FL004586
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAATTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|32864974|gb|CF004656.1|CF004656
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|32930900|gb|CF035712.1|CF035712
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCC
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGT-C
EST: gi|32837751|gb|CD977429.1|CD977429
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|32921787|gb|CF026599.1|CF026599
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAAGTCTTCCAAATGGCTCCGTC
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTC-AAAGTCTTCCAAATGGCTCCGTC
EST: gi|32931179|gb|CF035991.1|CF035991
EST:     AGCAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCA
EST: gi|32933816|gb|CF038628.1|CF038628
EST:     AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTG                         AATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGTCC
genomic: AGGAGGTGAAGGCTATCTAAATTTCATGGGAAATGAGTTTGGGCATCCTGgttagtcttc ... tacgtggcagAATGGATAGATTTTCCAAGAGGTCCTCAAAGTCTTCCAAATGGCTCCGT-C