1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
TGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTATTCATGTCAAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctggaaccttttatctaatttcatttacttttttgagttgaacggttttaaatgtaatctttggttacag
species | Zea mays |
transcript | GRMZM2G063851_T01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|89248619|gb|DY620405.1|DY620405
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|5901109|gb|AW042209.1|AW042209
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCTGAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|116813560|gb|EC856011.1|EC856011
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|78179069|gb|DV549442.1|DV549442
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCTGAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|31364242|gb|CD448597.1|CD448597
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|148929642|gb|EC876096.2|EC876096
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTGCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|76010584|gb|DT937754.1|DT937754
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|31363851|gb|CD448206.1|CD448206
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|149100798|gb|EE186892.2|EE186892
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|6973552|gb|AW438288.1|AW438288
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCTGAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|110202089|gb|EC883986.1|EC883986
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|71771088|gb|DR969025.1|DR969025
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|78021514|gb|DV489901.1|DV489901
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCTGAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|37380261|gb|CF626924.1|CF626924
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|32796104|gb|CD948340.1|CD948340
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: GATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|110954440|gb|EE174492.1|EE174492
genomic: GATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|76010585|gb|DT937755.1|DT937755
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|148991805|gb|EE033386.2|EE033386
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|93284645|gb|EB676909.1|EB676909
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|116825307|gb|EC869024.1|EC869024
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGGAAGTTGTACCTCCTATCCTCACTGAGCTGGEST: gi|149082973|gb|EE172210.2|EE172210
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATG-AAGTTGTACCTCCTATCCTCACTGAGCTGG
EST: GGGAGTTTG-CCTGAAAGCA-TTGCCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAGEST: gi|60395299|gb|DN228168.1|DN228168
genomic: GGGAGTTTGCCCTG-AAGCATTTG-CCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
EST: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTG GTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
genomic: AAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctgg ... ttggttacagGTGTCCAAGTTGTATGAAGTTGTACCTCCTATCCTCACTGAGCTGGGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTATTCATGTCAAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTTTCCAATTGgtccgtctggaaccttttatctaatttcatttacttttttgagttgaacggttttaaatgtaatctttggttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC