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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTACACTTCTGCCAAACCTGTAATATTAGAACCTGTGATGAAGGTGGAACTCAAATTTCCAACTGAGTTTCAGGGCACAGTAACTGGTGATATGAACAAgtaagtgctttgttccaacaagttatccctctattgtaaattatggccggaacatcatttatttcatgcatagaattctttttcttctcaagaaatgccg...

Basic information

species Zea mays
transcript GRMZM2G056393_T02
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G056393_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os03g36780.1 (Oryza sativa), 5'ss of exon 17
GCTACACTTCTGCCAAACCTGTAATATTAGAACCTGTGATGAAGGTGGAACTCAAATTTCCAACTGAGTTTCAGGGCACAGTAACTGGTGATATGAACAAgtaagtgctttgttccaacaagttatccctctattgtaaattatggccgga---acatcatttatttcatgcatagaattctttttcttctcaaga-aatgccg
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GTTATGCTGCTGCTAGACCTGTAATATTGGAACCAGTGATGAAAGTGGAACTAAAAGTTCCTACAGAGTTCCAGGGCACGGTAACCGGTGACATGAACAAgtgagtgtttgatcgtaac----tttgcttctactgaaatgtatggttacacactcttaatcagtttcatgtgaagtgttccttttgggttcaagttaatattt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32933717|gb|CF038529.1|CF038529
EST:     CTCAAATTTCCAACTGAGTTTCAGGGCACAGTAACTGGTGATATGAACAA                         GAGAAAAGGGACCATTGTTGGAAATGAGCAGGAAGGTGACGACACCGTTGT
genomic: CTCAAATTTCCAACTGAGTTTCAGGGCACAGTAACTGGTGATATGAACAAgtaagtgctt ... gttaaaacagGAGAAAAGGGATCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGT
EST: gi|32932818|gb|CF037630.1|CF037630
EST:     CTCAAATTTCCAACTGAGTTTCAGGGCACAGTAACTGGTGATATGAACAA                         GAGAAAAGGGATCATTGTTGGAAATGAGCAGGAAGGTGACGACACCGTTGT
genomic: CTCAAATTTCCAACTGAGTTTCAGGGCACAGTAACTGGTGATATGAACAAgtaagtgctt ... gttaaaacagGAGAAAAGGGATCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGT
EST: gi|211184463|gb|FL030548.1|FL030548
EST:     CTCAAATTTCCAACTGAGTTTCAGGGCACAGTAACTGGTGATATGAACAA                         GAGAAAAGGGATCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGT
genomic: CTCAAATTTCCAACTGAGTTTCAGGGCACAGTAACTGGTGATATGAACAAgtaagtgctt ... gttaaaacagGAGAAAAGGGATCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGT
EST: gi|6020648|gb|AW065681.1|AW065681
EST:     CTCAAATTTCCAACTGAGTTTCAGGGCACAGTAACTGGTGATATGAACAA                         GAGAAAAGGGATCATTGNTGGAAATGAGCAGGAAGGTGACGACACCATTGT
genomic: CTCAAATTTCCAACTGAGTTTCAGGGCACAGTAACTGGTGATATGAACAAgtaagtgctt ... gttaaaacagGAGAAAAGGGATCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGT
EST: gi|33093919|gb|CF053913.1|CF053913
EST:     CTCAAATTTCCAACTGAGTTTCAGGGCACAGTAACTGGTGATATGAACAA                         GAGAAAAGGGATCATTGTTGGAAATGAGCAGGAAGGTGACGACACCGTTGT
genomic: CTCAAATTTCCAACTGAGTTTCAGGGCACAGTAACTGGTGATATGAACAAgtaagtgctt ... gttaaaacagGAGAAAAGGGATCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGT
EST: gi|69351603|gb|DR452190.1|DR452190
EST:     CTCAAATTTCCAACTGAGTTTCAGGGCACAGTAACTGGTGATATGAACAA                         GAGAAAAGGGATCATTGTTGGAAATGGGCAGGAAGGTGACGACACCATTGT
genomic: CTCAAATTTCCAACTGAGTTTCAGGGCACAGTAACTGGTGATATGAACAAgtaagtgctt ... gttaaaacagGAGAAAAGGGATCATTGTTGGAAATGAGCAGGAAGGTGACGACACCATTGT