1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
ATTGAGGCAGAAAGGAGTAAAGCTACTCGCAGATCAGCATCGTCGTGGGAAGAAGATGCTGATATCAAGGCATTAGAgtaagttgactgtttgacgcctgaaaaattgtgtttcccatcattcttggatttcatgataattgatgttgtccagtcttaaatgtatccatctatttgcaaactcaagtacattcttagacaattaagtatgcatattgtag
species | Zea mays |
transcript | GRMZM2G055219_T01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GGGAAGAAGATGCTGATATCAAGGCATTAGA GCCTCTTCCTCTACATCATCGACACATGGCAACAGCAAATCAGCAGEST: gi|5847135|gb|AW000214.1|AW000214
genomic: GGGAAGAAGATGCTGATATCAAGGCATTAGAgtaagttgac ... catattgtagGCCTCTTCCTCTACATCATCGACACATGGCAACAGCAAATCAGCAG
EST: GGGAAGAAGATGCTGATATCAAGGCATTAGA GCCTCTTCCTCTACATCATCGACACATGGCAACAGCAAATCAGCAGEST: gi|60338931|gb|DN205904.1|DN205904
genomic: GGGAAGAAGATGCTGATATCAAGGCATTAGAgtaagttgac ... catattgtagGCCTCTTCCTCTACATCATCGACACATGGCAACAGCAAATCAGCAG
EST: CGCAGATCAGCATCGTCGTGGGAAGAAGATGCTGATATCAAGGCATTAGA GCCTCTTCCTCTACATCATCGACACATGGCAACAGCAAATCAGCAGEST: gi|60343054|gb|DN210027.1|DN210027
genomic: CGCAGATCAGCATCGTCGTGGGAAGAAGATGCTGATATCAAGGCATTAGAgtaagttgac ... catattgtagGCCTCTTCCTCTACATCATCGACACATGGCAACAGCAAATCAGCAG
EST: CGCAGATCAGCATCGTCGTGGGAAGAAGATGCTGATATCAAGGCATTAGA GCCTCTTCCTCTACATCATCGACACATGGCAACAGCAAATCAGCAGEST: gi|5343246|gb|AI795551.1|AI795551
genomic: CGCAGATCAGCATCGTCGTGGGAAGAAGATGCTGATATCAAGGCATTAGAgtaagttgac ... catattgtagGCCTCTTCCTCTACATCATCGACACATGGCAACAGCAAATCAGCAG
EST: CGCAGATCAGCATCGTCGTGGGAAGAAGATGCTGATATCAAGGCATTAGA GCCTCTTCCTCTACATCATCGACACATGGCAACAGCAAATCAGCAG
genomic: CGCAGATCAGCATCGTCGTGGGAAGAAGATGCTGATATCAAGGCATTAGAgtaagttgac ... catattgtagGCCTCTTCCTCTACATCATCGACACATGGCAACAGCAAATCAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGAGGCAGAAAGGAGTAAAGCTACTCGCAGATCAGCATCGTCGTGGGAAGAAGATGCTGATATCAAGGCATTAGAgtaagttgactgtttgacgcctgaaaaattgtgtttcccatcattcttggatttcatgataattgatgttgtccagtcttaaatgtatccatctatttgcaaactcaagtacattcttagacaattaagtatgcatattgtag
- - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT