Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGACTGGAGgtcggtcctcttacacttgctcttcttagatctatattttgttttggcatctgattttatgggcttattcag

Basic information

species Zea mays
transcript GRMZM2G047310_T02
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71439549|gb|DR820599.1|DR820599
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|101399213|gb|EB821480.1|EB821480
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|211106291|gb|FL022809.1|FL022809
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTC
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTC
EST: gi|211106290|gb|FL022808.1|FL022808
EST:     CTCATTCAANAACGGGAGACTGGAG                         GGTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAA
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAA
EST: gi|211106292|gb|FL022810.1|FL022810
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|211541598|gb|FL022801.1|FL022801
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|211106297|gb|FL022815.1|FL022815
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCCCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|5816386|gb|AI987302.1|AI987302
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|13562200|gb|BG550420.1|BG550420
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTTCTGAGATCTTCAACTTTTCTCAAGATGATTTGGTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|93281335|gb|EB673599.1|EB673599
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|211106298|gb|FL022816.1|FL022816
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCCCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: gi|211106296|gb|FL022814.1|FL022814
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTT
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTT
EST: gi|211541599|gb|FL022802.1|FL022802
EST:     CTCATTCAAGAACGGGAGACTGGAG                         GTTACTGAGATCTTCAACTTTTCCCAAGATGATTTGTTAACTGAAGACATG
genomic: CTCATTCAAGAACGGGAGACTGGAGgtcggtcctc ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG