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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccctctttttgacgtagtcttcttgttgccattctttcttggagtatatgttgacatggtgttgtgacatttgcccttccacag

Basic information

species Zea mays
transcript GRMZM2G037698_T01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037698_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 5'ss of exon 15
GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccctctttt-tgacgta-------gtcttcttgttgccattctttcttggagtatatgttgacatggtgt-tgtgacatttgcccttccacag
||| ||||||||||| |||||||||   |||||||||||  ||||||| ||||||||||| || || ||||||  | |||| | || || |  |       |  |  |  ||| |||   | |||| | |  |   | |  |||| | |||| | |   |  |||  |||
GGTTTACCAAGTAGCAAATGTTAAGCTTGAATGGAATCTTGTCAAGACCTTACCAGATTTGTCAGGCACAGgttcgtccctttcttatggcccacattctcggttcgtgattggcatctgtgcttgcacttaac--taatttggtttctgtggcgtacacttttct-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211149654|gb|FL454000.1|FL454000
EST:     TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAG                         GGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
genomic: TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
EST: gi|32908360|gb|CF013173.1|CF013173
EST:     TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAG                         GGAAAGTAACTTCGGTAAAGTTCGGAG
genomic: TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGGTAAAGTTCGGAG
EST: gi|5055844|gb|AI734731.1|AI734731
EST:     TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAG                         GGAAAGTAACTTCGG
genomic: TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGG
EST: gi|32934237|gb|CF039049.1|CF039049
EST:     TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAG                         GGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTAC
genomic: TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTAC
EST: gi|78544020|gb|DV621518.1|DV621518
EST:     TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAG                         GGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
genomic: TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
EST: gi|33090853|gb|CF050847.1|CF050847
EST:     TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAG                         GGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGT
genomic: TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGT
EST: gi|32933281|gb|CF038093.1|CF038093
EST:     TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAG                         GGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGT
genomic: TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGT
EST: gi|5713843|gb|AI943828.1|AI943828
EST:     TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAG                         GGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
genomic: TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
EST: gi|32936163|gb|CF040975.1|CF040975
EST:     TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAG                         GGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
genomic: TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
EST: gi|32837457|gb|CD977135.1|CD977135
EST:     TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAG                         GGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGT
genomic: TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGT
EST: gi|148940044|gb|EC884787.2|EC884787
EST:     TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAG                         GGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
genomic: TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
EST: gi|21391194|gb|BQ529243.1|BQ529243
EST:     TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAG                         GGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
genomic: TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
EST: gi|166410938|gb|EG060200.1|EG060200
EST:     CATCAAGACATTACCAGATTTATCTGGAACAG                         GGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
genomic: CATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
EST: gi|78543890|gb|DV621388.1|DV621388
EST:     TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAG                         GGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
genomic: TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
EST: gi|20336919|gb|BQ172549.1|BQ172549
EST:     TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAG                         GGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
genomic: TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
EST: gi|33103734|gb|CF063694.1|CF063694
EST:     TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAG                         GGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTAC
genomic: TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTAC
EST: gi|211124458|gb|FL005597.1|FL005597
EST:     TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTG-AACAG                         GGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG
genomic: TAAGGCCGAATGGAATCTCATCAAGACATTACCAGATTTATCTGGAACAGgtatggccct ... ccttccacagGGAAAGTAACTTCGGTAAAGTTCGGAGCAGATGCTAAGTACATAGCCGTAG