Sequence
atgc intronic sequence ATGC exonic sequenceGCTAGAGGCAATGCAATCCTACAGGCAAGTTTGGAAAGAAGAAAACAAGCACTACACGAGCGTCGTGTGGCTCTGGAACAGGATgtatgccttattctactagcatacaattttctgcttttatgcatccaaaccccatttgttttgtgcatatttgttgtgaaagggcctctagctgagttgg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G036872_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os07g46450.3 (Oryza sativa), 5'ss of exon 11
GCTAGAGGCAATGCAATCCTACAGGCAAGTTTGGAAAGAAGAAAACAAGCACTACACGAGCGTCGTGTGGCTCTGGAACAGGATgtatgccttattctactagcatacaa-----ttttctgcttttatgcatccaaaccccatttgttttgtgcatatttgttgtgaaagggcctctagctgagttgg
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GCTAGAGGAAATGCAATCTTACAAGCAAGTTTGGAAAGAAGAAAACAAGCACTACATGAGCGCCGTTTGGCTCTGGAGCAGGATgtatgctatattcttttaccctatgaattagttatttcattccatgcttccaaaatatgctgaaaatttcaccatctgtagtaacag---tttcaatcaactt--
upper sequence: GRMZM2G036872_T02 (Zea mays), 5'ss of exon 17
lower sequence: PP1S271_62V6.1 (Physcomitrella patens), 5'ss of exon 17
GCTAGAGGCAATGCAATCCTACAGGCAAGTTTGGAAAGAAGAAAACAAGCACTACACGAGCGTCGTGTGGCTCTGGAACAGGATgtatgc--------cttattctactagcatac---aattttctgcttttatgcatccaaaccccatttgttttgtgcatatttgttgtgaaagggcctctag-ctgagttgg---------------------------------------
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GCAAAAGGAAATGCAATTTTACAAGCTAGTTTGGAAAGAAGAAAGCAAGCTCTACATGACCGTCGGCTGGCCCTTGAACAAGATgtatgtgtatccatcccggttcatttgcatgagggaaatgcacttcattggatatcccaagc--ggttatttta-gtataagtgtcatcgcattatccctcctctgagtaggccatatgcctgtcatttggggatgtttctgtacgttcag
upper sequence: GRMZM2G036872_T02 (Zea mays), 5'ss of exon 17
lower sequence: EFJ23838 (Selaginella moellendorffii), 5'ss of exon 16
GCTAGAGGCAATGCAATCCTACAGGCAAGTTTGGAAAGAAGAAAACAAGCACTACACGAGCGTCGTGTGGCTCTGGAACAGGATgtatgccttattctactagcatacaattttctgcttttatgc-atccaaaccccatttgttttgtgcatatttgttgtgaaagggcctctagctgagttgg
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GCTAAAGGAAATGCAATTCTTCAAGCGAGTTTGGAAAGACGAAAGCAAGCACTTCACGATCGCCGGCTCGCTCTTGAACAGGACgtatgc-tcgtgctattttc------ctttccttttttatgagattttgacttcaa----attgtaaacaccag---------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67039042|gb|CO465297.1|CO465297EST: AAAGAAGAAAACAAGCACTACATGAGCGTCGTGTGGCTCTGGAACAGGAT GTGTCAAGGTTGCAAGAGCAGCTACAGGCTGAAAGGGATCTTAGAGCTGCA
genomic: AAAGAAGAAAACAAGCACTACACGAGCGTCGTGTGGCTCTGGAACAGGATgtatgcctta ... tgttcactagGTGTCAAGGTTGCAAGAGCAGCTACAGGCTGAAAGGGATCTTAGAGCTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTAGAGGCAATGCAATCCTACAGGCAAGTTTGGAAAGAAGAAAACAAGCACTACACGAGCGTCGTGTGGCTCTGGAACAGGATgtatgccttattctactagcatacaattttctgcttttatgcatccaaaccccatttgttttgtgcatatttgttgtgaaagggcctctagctgagttgg
- - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - AAGAAA