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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCGTGGGATAGCATTACATAAGATGATTAGACTTATCACAATGGGTTTAGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagatttaactactttgtttcatttaaccttcgttgagtcttatagaacagtacctcatccaacaattatcttgcaatttatcttttgttagttatattagtgttgaggacttgaggtcattgttcttcttattattttgcag

Basic information

species Zea mays
transcript GRMZM2G032628_T01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032628_T01 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 17
GATCGTGGGATAGCATTACATAAGATGATTAGACTTATCACAATGGGTTTAGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagatttaactactttgtttcatttaaccttcgttgagtcttatagaacagtacctcatccaacaattatcttgcaatttatcttttgttagttatattagtgttgaggacttgaggtcattgttcttcttattattttgcag
|||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||  ||    |  ||    |  || |||   | || || | ||    |||||   |  |  ||  | |   | | ||  | ||   |     |   |||  |  |  ||| ||||| ||| | | |||||||||||
GATCGTGGAATAGCATTGCATAAAATGATTAGACTTATCACAATGGGGTTAGGAGGAGAAGGCTATCTTAACTTTATGGGAAATGAGTTCGGACATCCTGgtgagatttaataaca--atcacacaccatgtttgtttcttattttatatcaacttctcatttgatgacaatggttcttgtcacctagtattttctgggaaacaattg--gcttaaaggccattgatctaccttttattttgcag

upper sequence: GRMZM2G032628_T01 (Zea mays), 5'ss of exon 17
lower sequence: Vv08s0007g03750.t01 (Vitis vinifera), 5'ss of exon 17
GATCGTGGGATAGCATTACATAAGATGATTAGACTTATCACAATGGGTTTAGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtga--gatttaactactttgtttcatttaaccttcgttgagtcttatagaacagtacctcatccaacaattatcttgcaatttatcttttgttagttatattagtgttgaggacttgaggt-cattgttcttcttattattttgcag
|||||||| ||||||||||| || ||||| |||||||| || ||||| ||||| ||||| || || || |||||||||||||| || ||||||||||||||| |  || | || |   || ||| ||||  | |||    |||       ||   | | |  |        |||| | | |  ||| ||||      |  || |||  |||  | ||    | | || ||  | |||| |        
GATCGTGGAATAGCATTACACAAAATGATCAGACTTATTACCATGGGCTTAGGGGGAGAAGGATACCTGAATTTCATGGGAAACGAATTTGGACATCCTGgtaaaagaataaagtcaattattttatttg-cattcccaaagt-------aatgattcttgctagtgtttatatcattcgaaatatatttt------tgaatcagttgtgattatttatcctacgttatttcttttatcag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32802913|gb|CD955149.1|CD955149
EST:     TAATCTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: TAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|31354152|gb|CD438509.1|CD438509
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|67017922|gb|CO446671.1|CO446671
EST:     AGTAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|24765722|gb|CA400881.1|CA400881
EST:     ATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: ATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|24764942|gb|CA400103.1|CA400103
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|24764657|gb|CA399821.1|CA399821
EST:     CATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTCCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: CATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|67015582|gb|CO444331.1|CO444331
EST:     GTTTGGACATCCTG                         -ATGGATANA-TTTCCAAGA-GTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: GTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|67032289|gb|CO461038.1|CO461038
EST:     GGCTATCNTT-ATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: GGCTATC-TTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|32838528|gb|CD978206.1|CD978206
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|67042631|gb|CO468886.1|CO468886
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|24763965|gb|CA399135.1|CA399135
EST:     TGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|31360518|gb|CD444875.1|CD444875
EST:     GGAGGAGAGGGCTATCTTA-TTTCATGGGAAAATGAGTT-G-ACATCCTG                         AATG-ATAGATTTTC
genomic: GGAGGAGAGGGCTATCTTAATTTCATGGGAAA-TGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTC
EST: gi|67022063|gb|CO450812.1|CO450812
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|32838173|gb|CD977851.1|CD977851
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|31358648|gb|CD443005.1|CD443005
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|31361510|gb|CD445867.1|CD445867
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|67026391|gb|CO455140.1|CO455140
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|24764776|gb|CA399938.1|CA399938
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|24763853|gb|CA399024.1|CA399024
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|67023243|gb|CO451992.1|CO451992
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|31351548|gb|CD435905.1|CD435905
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATCATTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|32934900|gb|CF039712.1|CF039712
EST:     AGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|67018661|gb|CO447410.1|CO447410
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTGTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|31350231|gb|CD434588.1|CD434588
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGACATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|31357480|gb|CD441837.1|CD441837
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|67043028|gb|CO469283.1|CO469283
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|67011365|gb|CO440114.1|CO440114
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|5343127|gb|AI795537.1|AI795537
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|24765115|gb|CA400276.1|CA400276
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|24767830|gb|CA402966.1|CA402966
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|67018905|gb|CO447654.1|CO447654
EST:     AGGAG-AGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTNTCCAAGAAGTCCGCAAAGACTTNCA-GTGGTAAGTTTA
genomic: -GGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|31349259|gb|CD433616.1|CD433616
EST:     TAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: TAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|31352581|gb|CD436938.1|CD436938
EST:     AGGAGGCGATGGAAATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|31362258|gb|CD446615.1|CD446615
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: gi|31355884|gb|CD440241.1|CD440241
EST:     AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG                         AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 43 (downstream exon)
Score: 71

GATCGTGGGATAGCATTACATAAGATGATTAGACTTATCACAATGGGTTTAGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTATTCCAGGGAATAACAACAGTTATGACAAATGTCGTCGAAGATTTGACCT


Block sizes: 46 (upstream exon), 37 (downstream exon)
Score: 23

GATCGTGGGATAGCATTACATAAGATGATTAGACTTATCACAATGGGTTTAGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTATTCCAGGGAATAACAACAGTTATGACAAATGTCGTCGAAGATTTGACCT


Block sizes: 46 (upstream exon), 43 (downstream exon)
Score: 18

GATCGTGGGATAGCATTACATAAGATGATTAGACTTATCACAATGGGTTTAGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTATTCCAGGGAATAACAACAGTTATGACAAATGTCGTCGAAGATTTGACCT


Block sizes: 49 (upstream exon), 43 (downstream exon)
Score: 346

GATCGTGGGATAGCATTACATAAGATGATTAGACTTATCACAATGGGTTTAGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTATTCCAGGGAATAACAACAGTTATGACAAATGTCGTCGAAGATTTGACCT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCGTGGGATAGCATTACATAAGATGATTAGACTTATCACAATGGGTTTAGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagatttaactactttgtttcatttaaccttcgttgagtcttatagaacagtacctcatccaacaattatcttgcaatttatcttttgttagttatattagtgttgaggacttgaggtcattgttcttcttattattttgcag

- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG