Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAGgtaaactttttgttgtgggtgggattttttagtcacctagtcggtatgtgcatgaaaatttgtatctttagcttctgtgtatgcattgtgctccaaggtc...

Basic information

species Zea mays
transcript GRMZM2G032222_T01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032222_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os10g37210.1 (Oryza sativa), 5'ss of exon 17
ATATATCTCTGATGAGAAAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAGgtaaactttttgttgtgggtgggattttttagtcacctagtcggtatgtgcatgaaaatttgtatctttagcttc-tgtgtatgcattgtgctccaaggtc--------
 ||| || | || |||||||||||||  |||||||| |||||||| || |||||||||||||||||||||     ||||             |   |  | |   |||     ||| |||| | ||||| |||||| | ||| |||   || ||         | |          
GTATGTCACCGACGAGAAAGGTGACCAGAAGCTTCACATAAATGCTCAAAATTGTCTTCATTGCAAGgta-----tttgcc-----------tccatgttgattcagt-----tgtccatggacatttgcatcttttgtttcctgtaactgaatgaaatgttgacggtatctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24773594|gb|CA408848.1|CA408848
EST:     AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAG                         GCGTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGA
genomic: AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAGgtaaactttt ... gtatcttcagGC-TTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGA
EST: gi|76020278|gb|DT947448.1|DT947448
EST:     AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAG                         GCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
genomic: AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAGgtaaactttt ... gtatcttcagGCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
EST: gi|78120295|gb|DV538679.1|DV538679
EST:     AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTTTTCATTGCAAG                         GCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
genomic: AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAGgtaaactttt ... gtatcttcagGCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
EST: gi|148942933|gb|EC887977.2|EC887977
EST:     AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAG                         GCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
genomic: AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAGgtaaactttt ... gtatcttcagGCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
EST: gi|94479206|gb|EB708164.1|EB708164
EST:     AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTTTTCATTGCAAG                         GCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
genomic: AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAGgtaaactttt ... gtatcttcagGCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
EST: gi|71756373|gb|DR954310.1|DR954310
EST:     AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTTTTCATTGCAAG                         GCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
genomic: AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAGgtaaactttt ... gtatcttcagGCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
EST: gi|87157160|gb|DY401949.1|DY401949
EST:     AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAG                         GCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
genomic: AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAGgtaaactttt ... gtatcttcagGCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
EST: gi|161593692|gb|EY964319.1|EY964319
EST:     AGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCAATTGCAAG                         GCTTGCGACATCAAAG
genomic: AGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCA-TTGCAAGgtaaactttt ... gtatcttcagGCTTGCGACATCAAAG
EST: gi|31353246|gb|CD437603.1|CD437603
EST:     AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAG                         GCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
genomic: AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAGgtaaactttt ... gtatcttcagGCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
EST: gi|113702859|gb|EE680363.1|EE680363
EST:     AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAG                         GCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
genomic: AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAGgtaaactttt ... gtatcttcagGCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
EST: gi|21809980|gb|BQ668298.1|BQ668298
EST:     AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAG                         GCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA
genomic: AAGGTGACCCAAAGCTTCATATAAATGCACAGAATTGTCTTCATTGCAAGgtaaactttt ... gtatcttcagGCTTGCGACATCAAAGATCCAAAGCAGAACATCGAGTGGACAGTTCCAGAA