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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCAAGATCTTAGCAAATGCTGATGGACTTCGGTTGCTGCGCACACTGGAAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactggtaaccacaaaattctaagaatatctgcaagcatgatgtaatcgatccttgtttatgcag

Basic information

species Zea mays
transcript GRMZM2G030422_T01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030422_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os03g14980.1 (Oryza sativa), 5'ss of exon 17
TATCAAGATCTTAGCAAATGCTGATGGACTTCGGTTGCTGCGCACACTGGAAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactggtaaccac--aaaatt----ctaagaatatctgcaagcatgatgtaatcgatccttgtttatgcag
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TATCAAGATCTTAGCAAATGCTGATGGAGTACGGTTGCTGCGCACATTGGAAAATCGTTCATTTGATGCTTCTCGGAGTGCGTCTGAGACTGTAACAAAGgtaagttcttgtgaccatttaaaattacaactaaatatttttgcaagcttgacccaatagatccatcttggtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87156341|gb|DY401130.1|DY401130
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|211268556|gb|FL032964.1|FL032964
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|32793640|gb|CD945876.1|CD945876
EST:     AAAATCGGTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCTTTGACTGCTGCGGCAAATGCAGGTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|22490238|gb|BU050161.1|BU050161
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|211270985|gb|FL032966.1|FL032966
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|31360139|gb|CD444496.1|CD444496
EST:     AAAATCGTTCTTTTGATGCTTCTTGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|87152395|gb|DY397184.1|DY397184
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|211270984|gb|FL032965.1|FL032965
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|26559138|gb|CA831373.1|CA831373
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTG
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTG
EST: gi|19058659|gb|BM737326.1|BM737326
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAAG
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGC-AG
EST: gi|22520900|gb|BU079711.1|BU079711
EST:     AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAG                         CCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTGCTGCGGCAAATGCAGCTGCAGCAAGCAGT
EST: gi|31356149|gb|CD440506.1|CD440506
EST:     AAAATCGTTCTTTTGATGCTTCTTGCAATGCATCTGAGGCTGAAACAAAG                         CCTCTAATAAATCCCTTGACTG
genomic: AAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactg ... gtttatgcagCCTCTAATAAATCCCTTGACTG