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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATAAGAAGGTCGGAGAGAGATTAGTGTCAGTTGAAGATATTGCTATGGAGCACTGGAAAACCTATGGCAGGAATTTCTTTTCTAGATACGATTATGAGgtatttaatcaaatggtttcctgatattacacttaaggccatatatcttggaaccacctgatcaaatttcttgcacagtcatagtaatctgaatttgcca...

Basic information

species Zea mays
transcript GRMZM2G025854_T02
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025854_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os10g11140.2 (Oryza sativa), 5'ss of exon 17
GGATAAGAAGGTCGGAGAGAGATTAGTGTCAGTTGAAGATATTGCTATGGAGCACTGGAAAACCTATGGCAGGAATTTCTTTTCTAGATACGATTATGAGgtatttaatc-----aaatggtttcctgatattaca-cttaaggccatatatcttggaaccacctgatcaaatttcttgcacagtcatagtaatctgaatttgcca---------------------------
||||||||||| ||| ||||||||||||||||| |||||| | |||| ||| ||||||  ||||||||| ||||||||||| || ||||| ||||||||||||||| |||      ||||  || |||| || | |  ||| |    | |||||||     |||  || |||||||| | ||| | ||   || |   |  | |||                           
GGATAAGAAGGCCGGGGAGAGATTAGTGTCAGTGGAAGATGTAGCTAGGGAACACTGGGCAACCTATGGAAGGAATTTCTTCTCCAGATATGATTATGAGgtattttatctttcataatgaatttctgaaatgataatttatgagagtttatcttgcg--taccgaataaaatttctggtaca-ttatttcaacccagaaattccaatgaatcactaatcttgtactgtacag

upper sequence: GRMZM2G025854_T02 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA10G38590.1 (Glycine max), 5'ss of exon 17
GGATAAGAAGGTCGGAGAGAGATTAGTGTCAGTTGAAGATATTGCTATGGAGCACTGGAAAACCTATGGCAGGAATTTCTTTTCTAGATACGATTATGAGgtatttaatcaaatggtttcctgatattacacttaaggccatatatcttggaaccacctgatcaaatttcttgcacagtcatagtaatc--tgaatttgcca-----
 || |||||   ||| |||| |||  | || ||    ||  |||  ||||||||||||  ||| ||||| ||||||||||| |||||||| || || ||||||  ||        |       |  |||   ||    ||   |||  ||  |  ||  | | || | |  ||     | ||  |||    | || | |  |     
AGACAAGAATCCCGGGGAGAAATTGATCTCCGTATCTGACGTTGTGATGGAGCACTGGGCAACTTATGGAAGGAATTTCTTCTCTAGATATGACTACGAGgtaggtatcattgctgcaattgaagtttagttttgtaacc---tattctgagat-actaggttaagtgtaatgtttctttattttaacaaatcaagtcgttatatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78179982|gb|DV550355.1|DV550355
EST:     AGCACTGGAAAACCTATGGCAGGAATTTCTTTTCTAGATACGATTATGAG                         GCGTGTGAATCACACAGTGCAAACCAGATGATGGATCACCTTAGAGATGTT
genomic: AGCACTGGAAAACCTATGGCAGGAATTTCTTTTCTAGATACGATTATGAGgtatttaatc ... aattctacagGCGTGTGAATCACACAGTGCAAACCAGATGATGGATCACCTTAGAGATGTT
EST: gi|211515424|gb|FL132964.1|FL132964
EST:     AGCACTGGAAAACCTATGGCAGGAATTTCTTTTCTAGATACGATTATGAG                         GCGTGTGAATCACACAGTGCAAACCAGATGATGGATCACCTTAGAGATGTT
genomic: AGCACTGGAAAACCTATGGCAGGAATTTCTTTTCTAGATACGATTATGAGgtatttaatc ... aattctacagGCGTGTGAATCACACAGTGCAAACCAGATGATGGATCACCTTAGAGATGTT