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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTAAGTTCGAACCCAATGTGATGTGTGAATACATTGATAACAGGCTTCTGTTCCGATCTTGCCAGgtaaatgctgattgtaaggttgtttctgcttggtattgaacttgtttttgtgatacttccttacatggactcattttttgttagcag

Basic information

species Zea mays
transcript GRMZM2G018508_T03
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018508_T03 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os07g06950.1 (Oryza sativa), 5'ss of exon 21
GAAATTAAGTTCGAACCCAATGTGATGTGTGAATACATTGATAACAGGCTTCTGTTCCGATCTTGCCAGgtaaatgctgattgtaaggttgtttctgcttggtattgaacttgtttttgtgatact-tccttacatggactcattttttgttagcag
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GAAATCAAGTTTGAGCCCAATGTAATGTGTGAATATATTGACAATAGGCTTCTATTTCGAGCTTGCCAGgtatggcgtgattttt---ttttcttgaaccaataacattcttgtttctatgatattatctttacctgga---atcttttgcgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40286963|gb|CK327355.1|CK327355
EST:     ATGTGATGTGTGAATACATTGATAACAGGCTTCTGTTCCGATCTTGCCAG                         CTTGAAGATGGGGACATAATTTGTTTTCAAAAATCTTCAAAGGCAGATAGT
genomic: ATGTGATGTGTGAATACATTGATAACAGGCTTCTGTTCCGATCTTGCCAGgtaaatgctg ... ttgttagcagCTTGAAGATGGGGACATAATCTGTTTTCAAAAATCTTCAAAGGCAGATAGT