1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccctgatgtcatttgtttctcattctgtgaaaaaggatgatctctgattaaaagtggagttaaaccaacatggtattcttctgtgatgacag
species | Zea mays |
transcript | GRMZM2G005493_T01 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|29130773|gb|CB381477.1|CB381477
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|76286922|gb|DV026490.1|DV026490
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|211174464|gb|FL381682.1|FL381682
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|60344318|gb|DN211291.1|DN211291
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|32836432|gb|CD976110.1|CD976110
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|211379703|gb|FL400539.1|FL400539
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|32844741|gb|CD984422.1|CD984422
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|32845281|gb|CD984962.1|CD984962
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|213179445|gb|FM183428.1|FM183428
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|33097350|gb|CF057310.1|CF057310
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|32838372|gb|CD978050.1|CD978050
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTACGGEST: gi|32845336|gb|CD985017.1|CD985017
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|37385849|gb|CF630089.1|CF630089
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|60346929|gb|DN213902.1|DN213902
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|32935034|gb|CF039846.1|CF039846
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|211459151|gb|FL411539.1|FL411539
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|32844417|gb|CD984098.1|CD984098
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|211214717|gb|FL394674.1|FL394674
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|60337495|gb|DN204468.1|DN204468
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|67037452|gb|CO464268.1|CO464268
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|32844874|gb|CD984555.1|CD984555
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|6012630|gb|AW062067.1|AW062067
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|32838758|gb|CD978439.1|CD978439
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|60353702|gb|DN220675.1|DN220675
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|110219847|gb|EC901745.1|EC901745
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATTTCCGGEST: gi|74244418|gb|DT652332.1|DT652332
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: TTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|67010832|gb|CO439581.1|CO439581
genomic: TTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|32837235|gb|CD976913.1|CD976913
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGGEST: gi|60347419|gb|DN214392.1|DN214392
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
EST: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATT GCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
genomic: GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccct ... gtgatgacagGCGGAGGGAAAGCACTGATGTTGAGGACTTGTTTCTTGCTCATATCTCCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGACTTGCACCTGGTGGCTTCAACTTTGACGCCAAATTgtcagtccctgatgtcatttgtttctcattctgtgaaaaaggatgatctctgattaaaagtggagttaaaccaacatggtattcttctgtgatgacag
- - - - - - - TGGTGG