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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCTAAGGCGCAATATAATAGgtttgtgattatcagtttgttccaaaatatatattgactttttttttctaatttatctctgcttttagacccattttctattttgtggaagacaggttat...

Basic information

species Zea mays
transcript GRMZM2G000645_T01
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 17
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCTAAGGCGCAATATAATAGgtttgtgattatcagtttgttccaaaatatatattgactttttttttctaatttatctctgcttttagacccatt--ttctattttgtggaagacaggttat-
||||||| |||||||||||||||||||| |||||||||||||||||| | || | ||||||  | |||||| |||||||||| |||||||||||||||| ||| ||   |  |  |||| ||||||| |   | |  ||||| ||||   |  | | |||   |||  |||  ||  ||   |||  |   |     |||   
TACTTCTTAGTTTGATTGAGTACAAGACACTTGTGATGCGTGGGGATATTGAACGTGCAAATGATATTTTACCATCCATACCAAAGGCGCAATATAATAAgttagttgctgact-tttgatccaaaacaatgagtttcttttattttggtacctgtttct--ctttgaacctgttgatttggtttcttaataattttgttcct

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os06g05180.4 (Oryza sativa), 5'ss of exon 1
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCTAAGGCGCAATATAATAGgtttgtgattatcagtttgttccaaaatatatattgactttttttttctaatttatctctgcttttagacccatt--ttctattttgtggaagacaggttat-
                      |||||| |||||||||||||||||| | || | ||||||  | |||||| |||||||||| |||||||||||||||| ||| ||   |  |  |||| ||||||| |   | |  ||||| ||||   |  | | |||   |||  |||  ||  ||   |||  |   |     |||   
----------------------CAAGACACTTGTGATGCGTGGGGATATTGAACGTGCAAATGATATTTTACCATCCATACCAAAGGCGCAATATAATAAgttagttgctgact-tttgatccaaaacaatgagtttcttttattttggtacctgtttct--ctttgaacctgttgatttggtttcttaataattttgttcct

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 17
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCTAAGGCGCAATATAATAGgtttgtgattatcagtttgttccaaaatatatattgactttttttttctaatt-----tatctctgcttt-tagacccattttctattttgtggaagacaggttat
| ||| | || ||||||||||||||||| |||||||||||||| ||||||||    || ||  ||||| || |||| || || || | |||  |||| |||  |  || |   |  ||||| ||| | |   ||||| ||| |||   ||  |     |||   || | | |  |   |||    || || | |   ||||  |  
TGCTTTTAAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATCCCCAAAGAGCATCATAACAGg--taggact--taccttgttgcaagacaatgattgattttctttcaatatgtagaaatatgcttgatatgtgtagaaattaaaaatgtttttggtaacagaat--

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 17
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCTAAGGCGCAATATAATAGgt--ttgtgattatcagtt----tgttccaaaatatatattgactttttt-tttctaatttatctctgct---tttagacccattttctattttgtggaagacaggttat
||||| | ||||||||||| |||||||| ||||| |||||||| ||||||||    || ||  ||||| || |||| || ||||| | |||  |||| ||||  | || ||| || |||    |||| |  |||     ||   || ||| |||  || |||| | || |   ||| ||   |   | | || |  ||            
TACTTTTAAGTTTGATTGAATACAAGACACTTGTCATGCGTGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATTCCTAAAGAGCATCATAACAGgtagtagttattttctgttatgttgttacggaatgacccttactttctttatttagaaattatgtttgatatgttttgagaaaggcttttttgtaagggt----------

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 17
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 17
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCTAAGGCGCAATATAATAGgtttgtgattatcagtttgttccaaaatatatattgactttttttttctaatttatctctgcttttagacccattttctattttgtggaagacaggttat
| ||| | || ||||||||||||||||| |||||||||||||| ||||||||    || ||  | ||| |  |||| || || || | |||  |||| ||||    | |  | |  ||||   |   |  |   | |   ||  |||    |  || | |     ||  |    | | | |       || |  | || |
TGCTTTTAAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGATTTGGAAAGGGCCAATGATATTCTGCCATCAATCCCCAAAGAGCATCATAACAGgtagaagttagttaccttgtgttacgttgcaagataatgattaattttctttcaatatgttgaaatatgcttgatatgtgtagaaattaaaaatgctttt

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 17
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 17
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCTAAGGCGCAATATAATAGgtttg-tgattatcagtttgttccaaaatatatattgactttttttttctaatttatctctgcttttagacccattttctattttgtggaagacaggttat-
|  | || ||  |||||||||||||||| ||||||||||| || ||||| ||  | || |   |||| ||| |  | || ||||| |  ||  |||| |||| || |   | | |  || |         | |  |  | || ||| ||  | || ||| || | |  ||    | ||   ||||           |  |  
TGTTGCTAAGCCTGATTGAGTACAAGACTCTTGTGATGCGGGGTGATTTAGACAAAGCCAGTGAAATCTTACCTACAATTCCTAAAGATCAGCATAACAGgtatgctagatcttaacttctgtgtgtgcttgtgatt-cattctttatcgcacttctct-tgttatgtgatatgtcttaggtttttcatttctttaggaagg

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 17
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 21
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCTAAGGCGCAATATAATAGgtttgtgattatcagtttgttc-caaaatatatat---tgactttt--tttttctaa---tttatctctgcttttagacccatttt--ctattttgtggaagacaggttat----------------------------------------------
||||| | |||||||||||||||||||| |||||||||||||| |||||||| || || ||  || | ||| | || || ||||||| |||  ||||||||| || || | |   ||   || ||  ||   ||    ||  || |  | ||  |||   | ||||   | |   | |    |||    | ||||    ||  || |   |                                              
TACTTTTAAGTTTGATTGAGTACAAGACTCTTGTGATGCGTGGAGATTTGGAACAGGCTAATGAAGTCTTACCTTCAATTCCTAAGGAGCACCATAATAGgtatgagaatgtgctttccctcgcattatggttacagctggattatggtgttagtaaacatgtatccaaggtcacataatggtttaaattgttttcctaaattcacgcattcctacttttctgattctcgacttcaaaatcctgttcgttttgtcag

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 17
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 17
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCTAAGGCGCAATATAATAGgtttgtgatta-tcagtttgttccaaaatatat--attgactttttttttctaatttatctctgcttttagacccattttctattttgtggaagacaggttat
| || || ||  ||||||| |||||||| ||||||||||| || |||||||||   || ||  |||||||| |  | || ||||| | |||  |||| | || ||| ||   | | |||| || ||| | | |  ||| |||| |  ||  |  ||||   |||| |||   | | | ||   |  | ||    |    |   
TGCTGCTTAGCCTGATTGAATACAAGACTCTTGTGATGCGAGGCGATTTGGATAGAGCCAATCAAATTTTACCTACAATTCCTAAAGAGCAGCATAACAAgtatgttataggttattttggtctaaattttttgcattcacttataattcattctttactactgcattttatctcttgttgcctgctatgtcctatgaat---

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 17
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 17
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCTAAGGCGCAATATAATAGgt-ttgtgattatcagtttgttccaaaatatatattgactttttttttctaatttatctctgcttttagacccattttctattttgtggaagac-aggttat
||||||| | |||||||||||||||||| ||||| |||||||| || ||  | | |||||   |||||||| | |  || ||| | | ||| || |||||||  ||  |||   ||| |  |   |   |  || |    |   |||  |  | ||  | ||   | ||       |   ||||  | |    | || ||  
TACTTCTCAATTTGATTGAGTACAAGACACTTGTAATGCGTGGAGACTTTCAACGTGCAAGTGAAATTTTACCTTTGATTCCTCAAGAGCACTACAATAGgtactgaaattcatagtatactgacagcaaagtaattgtgtgaatttgatggtgtagatgtgtcctcaggttgtagtctgatttgatagcttgctagatt--

upper sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 17
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 17
TACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGATCATGCAAACAAAATTTTATCATCCATACCTAAGGCGCAATATAATAGgtttgtgattatcagt--ttgttccaaaatatatattgactttttttttctaatttat--ctctgcttttagacccattttctattttgtggaagacaggttat
||||||| |||||||||||||||||||| |||||||||||||| ||  |||| |  || ||  || ||||| | || || || || |  ||  |||||||||   |   ||    |   ||||   ||| |    |  | |           | |||       |  ||| || |   ||  | ||||||||   |     || 
TACTTCTCAGTTTGATTGAGTACAAGACTCTTGTGATGCGTGGTGACCTGGAACGGGCCAATGAACTTTTACCTTCAATTCCCAAAGAACATCATAATAGgtaaatttctactgttggctgttggtaaacaacagtaaaataagaggcaaacacttacaatgtagtatttggatc---ttcatgttttgtggggaattttgta-