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AAACGAAGGGATTTCTCGTTCAAGGAGACTTAACCTCAAGAATCCTCAAGAAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGATgtgagatgctgtattcactactggttttgtttatatgtgttgtcaatggaactctgtaaactatctattttctcag
species | Zea mays |
transcript | GRMZM5G870572_T03 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGAT CATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCAEST: gi|29946463|gb|CB816162.1|CB816162
genomic: AAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGATgtgagatgct ... attttctcagCATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCA
EST: AAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGAT CATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCAEST: gi|89247122|gb|DY618908.1|DY618908
genomic: AAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGATgtgagatgct ... attttctcagCATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCA
EST: AAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGAT CATGGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATTGTATCCAEST: gi|74239224|gb|DT647138.1|DT647138
genomic: AAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGATgtgagatgct ... attttctcagCATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCA
EST: GTCAGCTGCCTCAACATACACGGGACGAGCTTATGGAT CATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCAEST: gi|71301572|gb|DR786840.1|DR786840
genomic: GTCAGCTGCCTCAACATACACGGGACGAGCTTATGGATgtgagatgct ... attttctcagCATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCA
EST: AAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGAT CATTGGACGGCTATCCAGGAATTGCTTCGCCATTTTTGGTCATCGTATCCAEST: gi|24763305|gb|CA398481.1|CA398481
genomic: AAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGATgtgagatgct ... attttctcagCATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCA
EST: TTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGAT CATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATGGTATCCA
genomic: TTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGATgtgagatgct ... attttctcagCATTGGACGGCTATCCAGGAATTGCTACGCCATTTTTGGTCATCGTATCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACGAAGGGATTTCTCGTTCAAGGAGACTTAACCTCAAGAATCCTCAAGAAGGTCTCCTTGGTCAGCTGCCTCAACATACACGGGACGAGCTTATGGATgtgagatgctgtattcactactggttttgtttatatgtgttgtcaatggaactctgtaaactatctattttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT