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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAGAAGAACATTAGGAGATACTACATGGGTACTGTACCCAATGCGAGGCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAGgtacacaatagttaattactcagttttccttgttataaaggatctgtggctgtctctggagggtcttacatttctgccttgccaacgttgcag

Basic information

species Zea mays
transcript GRMZM5G864414_T02
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32926424|gb|CF031236.1|CF031236
EST:     CTCCTGCAAGAGCAG                         TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
genomic: CTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
EST: gi|13178646|gb|BG349904.1|BG349904
EST:     AATGCTCCTGCAAGAGCAG                         TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
genomic: AATGCTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
EST: gi|111433841|gb|EE298127.1|EE298127
EST:     GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAG                         TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
genomic: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
EST: gi|71448844|gb|DR829894.1|DR829894
EST:     GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAG                         TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
genomic: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
EST: gi|71417221|gb|DR803973.1|DR803973
EST:     GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAG                         TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
genomic: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
EST: gi|13558780|gb|BG550135.1|BG550135
EST:     GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAG                         TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
genomic: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
EST: gi|16378277|gb|BI992368.1|BI992368
EST:     GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAG                         TTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG
genomic: GCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAGgtacacaata ... aacgttgcagTTGGTGCACAAAGGAAATTGGAGTTGGATTATCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCAGAAGAACATTAGGAGATACTACATGGGTACTGTACCCAATGCGAGGCCAACAGTTAATTACTCGTACTTGAGAAACAATGCTCCTGCAAGAGCAGgtacacaatagttaattactcagttttccttgttataaaggatctgtggctgtctctggagggtcttacatttctgccttgccaacgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG