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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacatgatgtccttgaaaataccctcgtatcgtgctcgtaactgacttttagccgttgcttatttcag

Basic information

species Zea mays
transcript GRMZM2G460078_T01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G460078_T01 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os01g55590.1 (Oryza sativa), 5'ss of exon 16
ATTCCAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggac--atgatgtccttgaaaataccctcgtatcgtgctcgtaactgacttttagccgttgcttatttcag
||||| || ||  | ||||| |||||||| ||||||||||||||||||||||||||| || |  |  || |  |      | |  | || | | | | || ||| || |       |||||| | ||||
ATTCCTACGAGGTTGTACTTATGGGATTCGCTTCCTCGGAATGCCATGGGAAAGgtgcgggctgaaaattttttcttctttgcagttgtgttgagtttgttacttacct------attgcttttatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6601765|gb|AW256206.1|AW256206
EST:     CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: gi|5847518|gb|AW000597.1|AW000597
EST:     CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: gi|87153333|gb|DY398122.1|DY398122
EST:     CAACAAGACTATACTTGTTGGATTCTCTTCCTCGGAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: gi|32945399|gb|CF050218.1|CF050218
EST:     CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: gi|32867326|gb|CF007008.1|CF007008
EST:     CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: gi|166631378|gb|EG255927.1|EG255927
EST:     CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: gi|32940106|gb|CF044925.1|CF044925
EST:     CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: gi|37385309|gb|CF629791.1|CF629791
EST:     CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: gi|17921701|gb|BM259352.1|BM259352
EST:     CAACAAGACTATACTTGTTGGATTCTCTTCCTCGGAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: gi|37377992|gb|CF625646.1|CF625646
EST:     CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: gi|37392249|gb|CF633373.1|CF633373
EST:     CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: gi|18177865|gb|BM379075.1|BM379075
EST:     CACCAAGACTATACTTGTGGGATTCTCTTCCTCGAAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCAGGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: gi|91049610|gb|EB160028.1|EB160028
EST:     CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGCGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: gi|93012881|gb|EB638401.1|EB638401
EST:     CAACAAGACTATACTTGTGGGATTTTCTTCCTCGGAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: gi|211208064|gb|FL437175.1|FL437175
EST:     CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: gi|17970088|gb|BM276854.1|BM276854
EST:     CAACAAGACTATACTTGTTGGATTCTCTTCCTCGGAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
EST: gi|71533933|gb|DR784692.1|DR784692
EST:     CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAG                         GTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG
genomic: CAACAAGACTATACTTGTGGGATTCTCTTCCTCGGAATGCCATGGGAAAGgtggggacat ... cttatttcagGTTAACAAGAAGGAGCTGAAGAAATTGTTAGGAGCTTAGCCATGTGTATAG