1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
TCAAGCGAATCGCCGCCAAGGAAGGGGTATGCGCGCGCATCGTCGGCAAGGTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatgcatctttatggaactccgaccagcttttagctaccctgtttctcgaatctgccatgttcagaaacactggagcaggcagttcatggtccaagactctctgaatcaatggctattttgtctctatgttcatgcttgctgcagtctgtaacgtttgtatgtatcttgttctgaag
species | Zea mays |
transcript | GRMZM2G443985_T02 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAGGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|74231924|gb|DT639838.1|DT639838
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|50334375|gb|CO529501.1|CO529501
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|71439507|gb|DR820557.1|DR820557
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|78083294|gb|DV511687.1|DV511687
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|211501781|gb|FL158262.1|FL158262
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|78109374|gb|DV527790.1|DV527790
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|76014684|gb|DT941854.1|DT941854
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|211535403|gb|FL360264.1|FL360264
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|71418512|gb|DR804465.1|DR804465
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|89252818|gb|DY624604.1|DY624604
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|71771028|gb|DR968965.1|DR968965
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|76282427|gb|DV021995.1|DV021995
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|211457548|gb|FL334940.1|FL334940
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|50324042|gb|CO519168.1|CO519168
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|93016171|gb|EB641691.1|EB641691
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|78076561|gb|DV504995.1|DV504995
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|148990681|gb|EE032078.2|EE032078
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|78084510|gb|DV512903.1|DV512903
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|50337067|gb|CO532193.1|CO532193
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|91871743|gb|EB401700.1|EB401700
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|89757661|gb|DY687168.1|DY687168
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|78109441|gb|DV527857.1|DV527857
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGACEST: gi|93012122|gb|EB637642.1|EB637642
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
EST: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAG AATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
genomic: GTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatg ... tgttctgaagAATGATCGAAGACGCAGAGGAGAGGGGGCTGATCTCGCCCGGCACCACGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAGCGAATCGCCGCCAAGGAAGGGGTATGCGCGCGCATCGTCGGCAAGGTGGAGGCGTACCAGCCTCTGTGCTCCGTCAAGGATCGCAGCGCTCTGAGgtccgacatgcatctttatggaactccgaccagcttttagctaccctgtttctcgaatctgccatgttcagaaacactggagcaggcagttcatggtccaagactctctgaatcaatggctattttgtctctatgttcatgcttgctgcagtctgtaacgtttgtatgtatcttgttctgaag
- - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG