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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACGCTGGAGACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccctacttatttcaacacatttgatgctcatttttctccattatattttaagtatttttttgacaagtgctgtttaattatatag

Basic information

species Zea mays
transcript GRMZM2G421857_T02
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 5'ss of exon 16
CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACGCTGGAGACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccctacttatttcaacacatttgatgctcatttttctccattatatttta-agtatttttttgacaagtgctgtttaattatatag
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||     ||  |||| |       |  | || | |   ||   | ||| |  | | ||  |  ||||  | | |||||  || | | ||
CTTGTTGGTAAAGACGCACTGGCAGAATCTGACAAGATTACACTGGAGACAGCAAAACTTCTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtgttaaacccatttga-------tagttct-actaacctgtgtcataatccatattaactaattgatcaattctgttgcatgaaacag

upper sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 16
lower sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 17
CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACGCTGGAGACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccctacttatttcaacacatttgatgctcatttttctccattatattttaagtatttttttgacaagtgctgtttaattatatag----------------------------------------------------
||||| || ||||||||  | || ||| | || || ||||| || ||||| |||||||||||||| ||||| ||| | |||||||||||||| ||||||| ||||||  | | | ||    |  |   ||  || |  || |  ||| |  ||||  || | |||    | || |   ||  ||||   |                                                    
CTTGTCGGAAAAGATGCTTTAGCTGAAACAGATAAAATTACTCTAGAGACTGCAAAGCTTTTGAGGGAAGACTATCTTGCACAAAATGCATTTACCCCgtaagtcccagattaagtttttgat-tcaaattttcgtcctttttaatttttgtttacttactatttccttatgttccccttt-ttatgctggtctagaaattctttttccacttaatatatgtatctcatgtggctgtgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8401375|gb|BE057009.1|BE057009
EST:     AAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCTGTTTGGATGATGCGCAACAT
genomic: AAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|32850183|gb|CD989864.1|CD989864
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|60395278|gb|DN228147.1|DN228147
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|4647180|gb|AI622255.1|AI622255
EST:     AGCAAAGCTTTTGAGAGAAGATTATTTGGCNCAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: AGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|6540651|gb|AW225313.1|AW225313
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|37382047|gb|CF627944.1|CF627944
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|32921243|gb|CF026055.1|CF026055
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|67026160|gb|CO454909.1|CO454909
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCTGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|32845901|gb|CD985582.1|CD985582
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|37379100|gb|CF626281.1|CF626281
EST:     CAGCAAAGC-TTTGNAGAGAAGATTATTTGGCACAAAATGCATTCACCCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACA
genomic: CAGCAAAGCTTTTG-AGAGAAGATTATTTGGCACAAAATGCATTCA-CCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACA
EST: gi|32922059|gb|CF026871.1|CF026871
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|8368089|gb|BE051034.1|BE051034
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCTGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|32921648|gb|CF026460.1|CF026460
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|211333312|gb|FL454113.1|FL454113
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|211529162|gb|FL123428.1|FL123428
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|6465647|gb|AW191106.1|AW191106
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|60344600|gb|DN211573.1|DN211573
EST:     CAGCAAAGCTTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: CAGCAAAGC-TTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|60394371|gb|DN227241.1|DN227241
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|13149891|gb|BG320213.1|BG320213
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|24934761|gb|CA452979.1|CA452979
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCCCAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|32849884|gb|CD989565.1|CD989565
EST:     ACAGCAAAGCTTNTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|60350138|gb|DN217111.1|DN217111
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCTGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|211538183|gb|FL123481.1|FL123481
EST:     ACAGCAAAGCTTTTGAGARAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|32846431|gb|CD986112.1|CD986112
EST:     ACAGCAAAGCTTTTGACAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGAATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|6020503|gb|AW065431.1|AW065431
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|24773770|gb|CA409024.1|CA409024
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|149070205|gb|EE158607.2|EE158607
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|16920249|gb|BM074572.1|BM074572
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|24774168|gb|CA409422.1|CA409422
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|110481109|gb|EE010954.1|EE010954
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|32846734|gb|CD986415.1|CD986415
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|8368090|gb|BE051035.1|BE051035
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCTGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|60345716|gb|DN212689.1|DN212689
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCTGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|37392971|gb|CF633740.1|CF633740
EST:     TTGGGACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: TTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|60394673|gb|DN227543.1|DN227543
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|8665370|gb|BE186186.1|BE186186
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCTGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|60400856|gb|DN233663.1|DN233663
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|60337909|gb|DN204882.1|DN204882
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|60400522|gb|DN233329.1|DN233329
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|31356686|gb|CD441043.1|CD441043
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCTGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|211231301|gb|FL464305.1|FL464305
EST:     GCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAA---ATTTGGATGATGCGCAACAT
genomic: GCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|24934762|gb|CA452980.1|CA452980
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|21390003|gb|BQ528052.1|BQ528052
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCTCCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|211333313|gb|FL454114.1|FL454114
EST:     TTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: TTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|17931754|gb|BM268714.1|BM268714
EST:     ACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|5124171|gb|AI745795.1|AI745795
EST:     CTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: CTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|22542087|gb|BU092525.1|BU092525
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|60352649|gb|DN219622.1|DN219622
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|211181863|gb|FL474509.1|FL474509
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|6227177|gb|AW155706.1|AW155706
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|32921742|gb|CF026554.1|CF026554
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|40334940|gb|CK369010.1|CK369010
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|32920116|gb|CF024928.1|CF024928
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|60400575|gb|DN233382.1|DN233382
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|24773749|gb|CA409003.1|CA409003
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|108953394|gb|EC364719.1|EC364719
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|211181862|gb|FL474508.1|FL474508
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|32921546|gb|CF026358.1|CF026358
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|60356133|gb|DN223106.1|DN223106
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
EST: gi|211156007|gb|FL123542.1|FL123542
EST:     ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCATCCC                         ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT
genomic: ACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccc ... aattatatagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAACAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGTTGGTAAAGATGCGCTGGCAGAATCTGACAAGATTACGCTGGAGACAGCAAAGCTTTTGAGAGAAGATTATTTGGCACAAAATGCATTCACCCCgtgagtcccctacttatttcaacacatttgatgctcatttttctccattatattttaagtatttttttgacaagtgctgtttaattatatag

- - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG