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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCCGTGGTAATGCTTCAAAAAAGCGGAAGGAGGTCACTGATGCAGCTGCGCAGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAAgtgagtaatcatatccttttagcaagatccatatccctaaatggggaggcggtgggtttattctgcagacactaaatgccctaaaattcttcttaaccat...

Basic information

species Zea mays
transcript GRMZM2G414496_T08
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32937939|gb|CF042758.1|CF042758
EST:     CGCAGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAA                         CTGAAGGAAATGACCACGGTGGAATTGAGATCCTACCTGACCGCGCATGAT
genomic: CGCAGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAAgtgagtaatc ... tcatttgcagCTGAAGGAAATGACCACGGTGGAATTGAGATCCTACCTGACCGCGCATGAT
EST: gi|211402618|gb|FL252146.1|FL252146
EST:     CGCAGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAA                         CTGAAGGAAATGACCACGGTGGAATTGAGATCCTACCTGACCGCGCATGAT
genomic: CGCAGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAAgtgagtaatc ... tcatttgcagCTGAAGGAAATGACCACGGTGGAATTGAGATCCTACCTGACCGCGCATGAT
EST: gi|33097000|gb|CF056960.1|CF056960
EST:     CGCAGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAA                         CTGAAGGAAATGACCACGGTGGAATTGAGATCCTACCTGACCGCGCATGAT
genomic: CGCAGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAAgtgagtaatc ... tcatttgcagCTGAAGGAAATGACCACGGTGGAATTGAGATCCTACCTGACCGCGCATGAT
EST: gi|71312125|gb|DR792591.1|DR792591
EST:     CGCAGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAA                         CTGAAGGAAATGACCACGGTGGAATTGAGATCCTACCTGACCGCGCATGAT
genomic: CGCAGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAAgtgagtaatc ... tcatttgcagCTGAAGGAAATGACCACGGTGGAATTGAGATCCTACCTGACCGCGCATGAT
EST: gi|21331411|gb|BQ486792.1|BQ486792
EST:     CGCAGATAAGTGCTGCTTATGACTGGGCAGAACTTGCAGACAATGGAAAA                         CTGAAGGAAATGACCCCGGTGGAATTGAGATCCTACCTGACCGCGCATGAT
genomic: CGCAGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAAgtgagtaatc ... tcatttgcagCTGAAGGAAATGACCACGGTGGAATTGAGATCCTACCTGACCGCGCATGAT
EST: gi|211405145|gb|FL252147.1|FL252147
EST:     AGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAA                         CTGAAGGAAATGACCACGGTGGAATTGATATCCTACCTGACCGCGCATGAT
genomic: AGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAAgtgagtaatc ... tcatttgcagCTGAAGGAAATGACCACGGTGGAATTGAGATCCTACCTGACCGCGCATGAT
EST: gi|14245465|gb|BG874047.1|BG874047
EST:     CGCAGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAA                         CTGAAGGAAATGACCACGGTGGAATTGAGATCCTACCTGACCGCGCATGAT
genomic: CGCAGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAAgtgagtaatc ... tcatttgcagCTGAAGGAAATGACCACGGTGGAATTGAGATCCTACCTGACCGCGCATGAT
EST: gi|71312126|gb|DR792592.1|DR792592
EST:     CGCAGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAA                         CTGAAGGAAATGACCACGGTGGAATTGAGATCCTACCTGACCGCGCATGAT
genomic: CGCAGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAAgtgagtaatc ... tcatttgcagCTGAAGGAAATGACCACGGTGGAATTGAGATCCTACCTGACCGCGCATGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCCCGTGGTAATGCTTCAAAAAAGCGGAAGGAGGTCACTGATGCAGCTGCGCAGATAAGTGCTGCTTATGATTGGGCAGAACTTGCAGACAATGGAAAAgtgagtaatcatatccttttagcaagatccatatccctaaatggggaggcggtgggtttattctgcagacactaaatgccctaaaattcttcttaaccat

- - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT