1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TGCACATACAGATTGCATTATCACCACAGATGATAAAGTAGCAGAAACTTTTCTGCGTCAAGTTGATAGgtacgttaccagcgcctctttttttattcatttttactgtttgtgcagtcggttaataaatgtcctttgttttggccgccactgtgtacaatgttattttgtttggagttcaatgatgattgatacctgatgttatatttcacttctacaattgcaacag
species | Zea mays |
transcript | GRMZM2G375504_T03 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: ATCACCACAGATGATAAAGTAGCAGAAACTTTTCTGCGTCAAGTTGATAG TGCTGCTGTATTTCATAATGCGAGTACACGATTCTCTGATGGGGCTCGTEST: gi|211479616|gb|FL182113.1|FL182113
genomic: ATCACCACAGATGATAAAGTAGCAGAAACTTTTCTGCGTCAAGTTGATAGgtacgttacc ... attgcaacagTGCTGCTGTATTTCATAATGCGAGTACACGATTCTCTGATGGGGCTCGT
EST: TTTTCTGCGTCAAGTTGATAG TGCTGCTGTATTTCATAATGCGAGTACACGATTCTCTGATGGGGCTCGTTTEST: gi|60348148|gb|DN215121.1|DN215121
genomic: TTTTCTGCGTCAAGTTGATAGgtacgttacc ... attgcaacagTGCTGCTGTATTTCATAATGCGAGTACACGATTCTCTGATGGGGCTCGTTT
EST: ATCACCACAGATGATAAAGTAGCAGAAACTTTTCTGCGTCAAGTTGATAG TGCTGCTGTATTTCATAATGCGAGTACACGATTCTCTGATGGGGCTCGEST: gi|87154005|gb|DY398794.1|DY398794
genomic: ATCACCACAGATGATAAAGTAGCAGAAACTTTTCTGCGTCAAGTTGATAGgtacgttacc ... attgcaacagTGCTGCTGTATTTCATAATGCGAGTACACGATTCTCTGATGGGGCTCG
EST: ATCACCACAGATGATAAAGTAGCAGAAACTTTTCTGCGTCAAGTTGATAG TGCTGCTGTATTTCATAATGCGAGTACACGATTCTCTGATGGGGCTCGTTTEST: gi|22491554|gb|BU051477.1|BU051477
genomic: ATCACCACAGATGATAAAGTAGCAGAAACTTTTCTGCGTCAAGTTGATAGgtacgttacc ... attgcaacagTGCTGCTGTATTTCATAATGCGAGTACACGATTCTCTGATGGGGCTCGTTT
EST: TCACCACAGATGATAAAGTAGCAGAAACTTTTTCTGCGTCAAGTTGATAG TGCTGCTGTATTTCATAATGCGAGTACACGATTCTCTGATGGGGCTCGTTT
genomic: TCACCACAGATGATAAAGTAGCAGAAACTTTT-CTGCGTCAAGTTGATAGgtacgttacc ... attgcaacagTGCTGCTGTATTTCATAATGCGAGTACACGATTCTCTGATGGGGCTCGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCACATACAGATTGCATTATCACCACAGATGATAAAGTAGCAGAAACTTTTCTGCGTCAAGTTGATAGgtacgttaccagcgcctctttttttattcatttttactgtttgtgcagtcggttaataaatgtcctttgttttggccgccactgtgtacaatgttattttgtttggagttcaatgatgattgatacctgatgttatatttcacttctacaattgcaacag
- - - - - - - - - - - - - CAGATG