Sequence
atgc intronic sequence ATGC exonic sequenceACAGTTGGTCAAGCATATGAAGACATGCAAACGCAAAATCAGCATCTTCTTCAACAGCTTACTGATAGAGATGACTTTAACATAAAGgtatttatttgttctctccttttccactttcacgtcaaagctgcaaactcataacatacagattggaattggagatacatgcccggggtttttatgccaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G341271_T02 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os10g41590.2 (Oryza sativa), 5'ss of exon 15
ACAGTTGGTCAAGCATATGAAGACATGCAAACGCAAAATCAGCATCTTCTTCAACAGCTTACTGATAGAGATGACTTTAACATAAAGgtatttatttgttc-----tctccttttccactttcacgtcaaagctgcaaactcataac-----atacagattggaattggag------ataca-tgcccggggtttttatgccaa-------------------------------------------------------------------
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ACAATTGGTCAAGCATATGAAGACATGCAAACCCAAAATCAGCACCTTCTTCAACAGGTTGCTGATAGAGATGATTTTAACATAAAGgtatttagatatccatcaatcttgttgcttgcctttgtagagttcctggtagtctgtagcaccttacacggctagtaggtgcagggatttatagactgttctagattctagaaccaaagctaatctgctcttttttccccaatcacaagttggttcctgtcctaacatggttctcatctaacag
upper sequence: GRMZM2G341271_T02 (Zea mays), 5'ss of exon 16
lower sequence: EFJ11831 (Selaginella moellendorffii), 5'ss of exon 15
ACAGTTGGTCAAGCATATGAAGACATGCAAACGCAAAATCAGCATCTTCTTCAACAGCTTACTGATAGAGATGACTTTAACATAAAGgtatttatttgttctctccttttccactttcacgtcaaagctgcaaactcataacatacagattggaattggagatacatgcccggggtttttatgccaa
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ACTATCGGGCAAGCATATGAAGACATGCAAACTCAAAACCAAAGGCTTTTGCAGCAGATATCCGAAAGGGATGATTACAATACAAAGg--tttgttagat-tcacgttagctagaaatgagactaattttccg-cttacag----------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78084481|gb|DV512874.1|DV512874EST: ATCAGCATCTTCTTCAACAGCTTACTGATAGAGATGACTTTAACATAAAG CTAGTATCAGATAGTGTGAAGATGAAACAAGCTTGTAGTTCCCTTCTCTCT
genomic: ATCAGCATCTTCTTCAACAGCTTACTGATAGAGATGACTTTAACATAAAGgtatttattt ... tatataacagCTAGTATCAGATAGTGTGAAGATGAAACAAGCTTGTAGTTCCCTTCTCTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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ACAGTTGGTCAAGCATATGAAGACATGCAAACGCAAAATCAGCATCTTCTTCAACAGCTTACTGATAGAGATGACTTTAACATAAAGgtatttatttgttctctccttttccactttcacgtcaaagctgcaaactcataacatacagattggaattggagatacatgcccggggtttttatgccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG