1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGGgtatattttctttcctttagtcctagaatattttccctcaaaagttactaaaacataactcagcatgcacaatgaatctttttcctgaaaagttactaaaacatgactcaccatgtgcag
species | Zea mays |
transcript | GRMZM2G340527_T01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGGATGGG ATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAAEST: gi|4621444|gb|AI612277.1|AI612277
genomic: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGGgtatattttc ... ccatgtgcagATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAA
EST: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGG ATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAAEST: gi|76015090|gb|DT942260.1|DT942260
genomic: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGGgtatattttc ... ccatgtgcagATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAA
EST: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGG ATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAAEST: gi|33091926|gb|CF051920.1|CF051920
genomic: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGGgtatattttc ... ccatgtgcagATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAA
EST: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGG ATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAAEST: gi|76018236|gb|DT945406.1|DT945406
genomic: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGGgtatattttc ... ccatgtgcagATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAA
EST: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGG ATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAAEST: gi|76921149|gb|DV168468.1|DV168468
genomic: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGGgtatattttc ... ccatgtgcagATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAA
EST: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGG ATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAAEST: gi|32933987|gb|CF038799.1|CF038799
genomic: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGGgtatattttc ... ccatgtgcagATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAA
EST: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGG ATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAAEST: gi|32930083|gb|CF034895.1|CF034895
genomic: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGGgtatattttc ... ccatgtgcagATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAA
EST: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGG ATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAAEST: gi|76921148|gb|DV168467.1|DV168467
genomic: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGGgtatattttc ... ccatgtgcagATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAA
EST: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGG ATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAA
genomic: CAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGGgtatattttc ... ccatgtgcagATGAATGATGGAAAGCCCACAGAGGAAGACGTAGAAGCTAAAATGGCACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGGgtatattttctttcctttagtcctagaatattttccctcaaaagttactaaaacataactcagcatgcacaatgaatctttttcctgaaaagttactaaaacatgactcaccatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA