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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACattacccgatttatcaggaacaggtgtgtccctctttttaccatagtctcttggtgcaatttcttcttagttcttggagcgcacattgacttggtgttgtgacatttgtccttccacagggaaagtaacttccgtaaaattc

Basic information

species Zea mays
transcript GRMZM2G324540_T02
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G324540_T02 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 5'ss of exon 15
GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACattacccgatttatcaggaacaggtgtgtccctctttt-taccatagtctcttggtgca-atttcttcttagttcttggagcgcacattgacttggtgt-tgtgacatttgtccttccacagggaaagtaacttccgtaaaattc
||| ||||||||||| |||||||||   |||||||||||| ||||||| ||||| ||||| ||||| ||||||  |||||| | || |  |  |   ||| ||| |    ||    |  || |||| |    ||  | | ||||| | |||| | |      |||  |||                       
GGTTTACCAAGTAGCAAATGTTAAGCTTGAATGGAATCTTGTCAAGACCTTACCAGATTTGTCAGGCACAGgttcgtccctttcttatggcccacattctcggttcgtgattggcatctgtgcttgcacttaac--taatttggtttctgtggcgtacacttttct-cag-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32835508|gb|CD975186.1|CD975186
EST:     GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGAC                         GGAGTAGACGCGAAATACATAGCCATAGGTTCTATGGACCGCAATCTACGG
genomic: GGTCTACCAAGTAGCTAATGTTAAGGCCGAATGGAATCTTATCAAGACattacccgat ... cgtaaaattcGGAGTAGACGCGAAATACATAGCCATAGGTTCTATGGACCGCAATCTACGG