1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccctatttttctttccttcagttctgcaatgttttttttcctcaggttactagggacacggctcaccatgaacaccacttgcacacgcag
species | Zea mays |
transcript | GRMZM2G304362_T01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|24769909|gb|CA405038.1|CA405038
genomic: GAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|76016674|gb|DT943844.1|DT943844
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|5762221|gb|AI967269.1|AI967269
genomic: CAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|6827647|gb|AW331290.1|AW331290
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|5714044|gb|AI944029.1|AI944029
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCCCAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCCCAGEST: gi|13150171|gb|BG320493.1|BG320493
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|60672569|gb|DN475271.1|DN475271
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|32907431|gb|CF012244.1|CF012244
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|211402195|gb|FL458654.1|FL458654
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|6022688|gb|AW067616.1|AW067616
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGGGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|31356810|gb|CD441167.1|CD441167
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|32938836|gb|CF043655.1|CF043655
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACACTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|32944077|gb|CF048896.1|CF048896
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|91053675|gb|EB164093.1|EB164093
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|211165342|gb|FL103230.1|FL103230
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGCAGACGCTAAAATGGCACAGEST: gi|7227815|gb|AW566456.1|AW566456
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|5081116|gb|AI738162.1|AI738162
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|29545140|gb|CB605318.1|CB605318
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|4646500|gb|AI491639.2|AI491639
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCNCGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|31405947|gb|CD484679.1|CD484679
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|32932471|gb|CF037283.1|CF037283
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|32938437|gb|CF043256.1|CF043256
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|6102094|gb|AW126564.1|AW126564
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|211402194|gb|FL458653.1|FL458653
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTYTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|28982344|gb|BQ538349.2|BQ538349
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: GAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|60343761|gb|DN210734.1|DN210734
genomic: GAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|32944136|gb|CF048955.1|CF048955
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAGEST: gi|5739621|gb|AI947416.1|AI947416
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
EST: CGATCAAGTTCCCAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGG GTTAGCGATGAAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
genomic: CGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccc ... gcacacgcagGTTAGCGATGGAAAGCCCGCGGAGGAAGACGTAGACGCTAAAATGGCACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccctatttttctttccttcagttctgcaatgttttttttcctcaggttactagggacacggctcaccatgaacaccacttgcacacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA