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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGCATCGAAATGGAAACTATACCCAATTAGATGATATTCAAACCCCTTCCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAGgtaactctgatgtggttcctgatttaacattttttatttcttggtcagtgcatgtgtaatctttgttgacagaaaacggaacagtagtctaagctatttt...

Basic information

species Zea mays
transcript GRMZM2G173868_T04
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74239610|gb|DT647524.1|DT647524
EST:     CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAG                         GGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
genomic: CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAGgtaactctga ... tttttgatagGGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
EST: gi|76281154|gb|DV020722.1|DV020722
EST:     CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAG                         GGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
genomic: CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAGgtaactctga ... tttttgatagGGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
EST: gi|6445502|gb|AW179420.1|AW179420
EST:     CCAGTCACTATTCAATG-CCAATGTGTTGTTTACGCCAGGTTACATCAAG                         GGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
genomic: CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAGgtaactctga ... tttttgatagGGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
EST: gi|71445065|gb|DR826115.1|DR826115
EST:     CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAG                         GGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
genomic: CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAGgtaactctga ... tttttgatagGGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
EST: gi|74239609|gb|DT647523.1|DT647523
EST:     ATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAG                         GGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
genomic: ATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAGgtaactctga ... tttttgatagGGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
EST: gi|50338539|gb|CO533665.1|CO533665
EST:     CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAG                         GGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT
genomic: CCAGTCACTATTCAATGTCCAATGTGTTGTTTACGCCAGGTTACATCAAGgtaactctga ... tttttgatagGGAGTTTGTCCAGGATTGACTCATGCGCAGAAATTTGGGATATCATACTCT