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TGATTTCACTCCCGATGACATGTGTCCTACAAGCACTCAGTTCTTTGAAATGCATGTTGATAATCCTTCAGGGTTTCATGAGACTGGTCACCATGAAGAGgtatatacatcattctggcacagtgacacgtacatccatctcctactttccatgctaaaaaaaacgtgtgttcttttcag
species | Zea mays |
transcript | GRMZM2G168449_T03 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TGCATGTTGATAATCCTTCAGGGTTTCATGAGACTGGTCACCATGAAGAG CAGGGTTTGCTGATTGACCTGGGGAATGACCATGATGCTTTTGGGGAAGCTEST: gi|22545084|gb|BU097443.1|BU097443
genomic: TGCATGTTGATAATCCTTCAGGGTTTCATGAGACTGGTCACCATGAAGAGgtatatacat ... ttcttttcagCAGGGTTTGCTGATTGACCTGGGGAATGACCATGATGCTTTTGGGGAAGCT
EST: TGCATGTTGATAATCCTTCAGGGTTTCATGAGACTGGTCACCATGAAGAG CAGGGTTTGCTGATTGACCTGGGGAATGACCATGATGCTTTTGGGGAAGCTEST: gi|26455539|gb|CA827122.1|CA827122
genomic: TGCATGTTGATAATCCTTCAGGGTTTCATGAGACTGGTCACCATGAAGAGgtatatacat ... ttcttttcagCAGGGTTTGCTGATTGACCTGGGGAATGACCATGATGCTTTTGGGGAAGCT
EST: TGCATGTTGATAATCCTTCAGGGTTTCATGAGACTGGTCACCATGAAGAG CAGGGTTTGCTGATTGACCTGGGGAATGACCATGATGCTTTTGGGGAAGCTEST: gi|211451737|gb|FL033183.1|FL033183
genomic: TGCATGTTGATAATCCTTCAGGGTTTCATGAGACTGGTCACCATGAAGAGgtatatacat ... ttcttttcagCAGGGTTTGCTGATTGACCTGGGGAATGACCATGATGCTTTTGGGGAAGCT
EST: TTCAGGGTTTCATGAGACTGGTCACCATG-A-AG -AGGGTTTGCTGATTGACCTGGGGAATGACCATGATGCTTTTGGGGAAGCTEST: gi|78085280|gb|DV513673.1|DV513673
genomic: TTCAGGGTTTCATGAGACTGGTCACCATGAAGAGgtatatacat ... ttcttttcagCAGGGTTTGCTGATTGACCTGGGGAATGACCATGATGCTTTTGGGGAAGCT
EST: TGCATGTTGATAATCCTTCAGGGTTTCATGAGACTGGTCACCATGAAGAG --GG-TTTGCTGATTGACCTGGG
genomic: TGCATGTTGATAATCCTTCAGGGTTTCATGAGACTGGTCACCATGAAGAGgtatatacat ... ttcttttcagCAGGGTTTGCTGATTGACCTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATTTCACTCCCGATGACATGTGTCCTACAAGCACTCAGTTCTTTGAAATGCATGTTGATAATCCTTCAGGGTTTCATGAGACTGGTCACCATGAAGAGgtatatacatcattctggcacagtgacacgtacatccatctcctactttccatgctaaaaaaaacgtgtgttcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA