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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCTTTGGTCGGGCGGGTGAAAAAAATAAAGAAGCACTCAAGATGTCAAAGCATATAACTAAACTTTTCCCAAATAAAGTGACAATTGAATCACCTGAGgtgtgtcattatgttagttctcaagagggtatataatatatagatctagaattggcttttgcaagttttaactcttaaaatatgctacag

Basic information

species Zea mays
transcript GRMZM2G157621_T01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157621_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os07g47530.1 (Oryza sativa), 5'ss of exon 16
TAGCTTTGGTCGGGCGGGTGAAAAAAATAAAGAAGCACTCAAGATGTCAAAGCATATAACTAAACTTTTCCCAAATAAAGTGACAATTGAATCACCTGAGgtgtgtcattatgttagttctcaagagggtatataatatatagatctagaattggcttttgcaagttttaactcttaaaatatgctacag
|||||||||||||| |  ||| ||||| ||||| || || |||||  | |||||| | |||||||| ||||||||||||||||||||  || ||||  |||||||||||| |||  ||| | |   ||  | ||  ||  |   ||  | | || || || |||||||||||||| | || || |     
TAGCTTTGGTCGGGTGAATGATAAAAACAAAGAGGCTCTGAAGATAGCGAAGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAGgtgtgtcatt-tgt--gttattatagggcgacatt-tactt---tcaggcactgcctctttcaagttttaactctgagaa-atacag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348856|gb|DN215829.1|DN215829
EST:     AGCATATAACTAAACTTTTCCCAAATAAAGTGACAATTGAATCACCTGAG                         GATGAAACGGAACTCTCCCAGTGGAAACAGCTATTGGGTCGTGACATT
genomic: AGCATATAACTAAACTTTTCCCAAATAAAGTGACAATTGAATCACCTGAGgtgtgtcatt ... tatgctacagGATGAAACGGAACTCTCCCAGTGGAAACAGCTATTGGGTCGTGACATT
EST: gi|60397550|gb|DN230366.1|DN230366
EST:     AGCATATAACTAAACTTTTCCCAAATAAAGTGACAATTGAATCACCTGAG                         GATGAAACGGAACTCTCCCAGTGGAAACAGCTATTGGGTCGTGACATTGAA
genomic: AGCATATAACTAAACTTTTCCCAAATAAAGTGACAATTGAATCACCTGAGgtgtgtcatt ... tatgctacagGATGAAACGGAACTCTCCCAGTGGAAACAGCTATTGGGTCGTGACATTGAA
EST: gi|31356419|gb|CD440776.1|CD440776
EST:     AGCATATAACTAAACTTTTCCCAAATAAAGTGACAATTGAATCACCTGAG                         GATGAAACGGAACTCTCCCAGTGGAAACAGCTATTGGGTCGTGACATTGAA
genomic: AGCATATAACTAAACTTTTCCCAAATAAAGTGACAATTGAATCACCTGAGgtgtgtcatt ... tatgctacagGATGAAACGGAACTCTCCCAGTGGAAACAGCTATTGGGTCGTGACATTGAA