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CACAAATGGAGAAGAGAGCTGTAATGGCAGAAACAATGCTGGAAGCTACAAAGCAATACCAGGTTGGGCAGGTTAAAGCCAACCAATCTTTCACTTCAAGgttaacttccactttccaagcatctagatcacttagactatctccagcagactttctatcccactccttatcaaactcctctctgcaaacagtgcatcta...
species | Zea mays |
transcript | GRMZM2G154883_T01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AAGCAATACCAGGTTGGGCAGGTTAAAGCCAACCAATCTTTCACTTCAAG TTCACCTCGTGCAGACCATGTTCCTGCGAAGATAAATCAAGAACCAAACCAEST: gi|211179247|gb|FL124466.1|FL124466
genomic: AAGCAATACCAGGTTGGGCAGGTTAAAGCCAACCAATCTTTCACTTCAAGgttaacttcc ... tcttctgtagTTCACCTCGTGCAGACCATGTTCCTGCGAAGATAAATCAAGAACCAAACCA
EST: AAGCAATACCAGGTTGGGCAGGTTAAAGCCAACCAATCTTTCACTTCAAG TTCACCTCGTGCAGACCATGTTCCTGCGAAGATAAATCAAGAACCAAACCAEST: gi|5895871|gb|AW037117.1|AW037117
genomic: AAGCAATACCAGGTTGGGCAGGTTAAAGCCAACCAATCTTTCACTTCAAGgttaacttcc ... tcttctgtagTTCACCTCGTGCAGACCATGTTCCTGCGAAGATAAATCAAGAACCAAACCA
EST: AAGCAATACCAGGTTGGGCAGGTTAAAGCCAACCAATCTTTCACTTCAAG TTCACCTCGTGCAGACCATGTTCCTGCGAAGATAAATCAAGAACCAAACCA
genomic: AAGCAATACCAGGTTGGGCAGGTTAAAGCCAACCAATCTTTCACTTCAAGgttaacttcc ... tcttctgtagTTCACCTCGTGCAGACCATGTTCCTGCGAAGATAAATCAAGAACCAAACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAAATGGAGAAGAGAGCTGTAATGGCAGAAACAATGCTGGAAGCTACAAAGCAATACCAGGTTGGGCAGGTTAAAGCCAACCAATCTTTCACTTCAAGgttaacttccactttccaagcatctagatcacttagactatctccagcagactttctatcccactccttatcaaactcctctctgcaaacagtgcatcta
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccactcc