1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GCTGGATTTTTCCTTGTTCAGTATGCTCACTTGTGGCAAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAGgtatgctccataatttatgccactccaagcagggcctagcaaatggaaataatcagatgactaccttactcctaatattttgtgctcatgatggatcataaattcgtgcgataatttatatctataatttcaccttgtaacttaccttttcatgccataccacgatatggcgtgtaacag
species | Zea mays |
transcript | GRMZM2G147191_T02 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAG GTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCGEST: gi|211530862|gb|FL078323.1|FL078323
genomic: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAGgtatgctcca ... cgtgtaacagGTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCG
EST: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAG GTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCGEST: gi|76282582|gb|DV022150.1|DV022150
genomic: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAGgtatgctcca ... cgtgtaacagGTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCG
EST: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAG GTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCGEST: gi|211538275|gb|FL465653.1|FL465653
genomic: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAGgtatgctcca ... cgtgtaacagGTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCG
EST: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAG GTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCGEST: gi|211530863|gb|FL078324.1|FL078324
genomic: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAGgtatgctcca ... cgtgtaacagGTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCG
EST: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAG GTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCGEST: gi|58029381|gb|CX724808.1|CX724808
genomic: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAGgtatgctcca ... cgtgtaacagGTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCG
EST: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAG GTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCGEST: gi|6672154|gb|AW282329.1|AW282329
genomic: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAGgtatgctcca ... cgtgtaacagGTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCG
EST: AAGATCATCTTANCAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAG GTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCGEST: gi|13557631|gb|BG548987.1|BG548987
genomic: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAGgtatgctcca ... cgtgtaacagGTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCG
EST: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAG GTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCGEST: gi|211368048|gb|FL471710.1|FL471710
genomic: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAGgtatgctcca ... cgtgtaacagGTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCG
EST: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAG GTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCGEST: gi|91868064|gb|EB399901.1|EB399901
genomic: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAGgtatgctcca ... cgtgtaacagGTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCG
EST: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAG GTTTCCCTAGACCCCAACCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCGEST: gi|60357940|gb|DN224913.1|DN224913
genomic: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAGgtatgctcca ... cgtgtaacagGTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCG
EST: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAG GTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCGEST: gi|16380053|gb|BI993288.1|BI993288
genomic: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAGgtatgctcca ... cgtgtaacagGTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCG
EST: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAG GTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCG
genomic: AAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAGgtatgctcca ... cgtgtaacagGTTTCCCTAGACCCCAAGCAATTCTTGGGTGTTGCTTCAGTCGTAGATGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGATTTTTCCTTGTTCAGTATGCTCACTTGTGGCAAGATCATCTTAACAAACTTTTTGACCTGTATGCCTCTGGAAAGCTAAAGgtatgctccataatttatgccactccaagcagggcctagcaaatggaaataatcagatgactaccttactcctaatattttgtgctcatgatggatcataaattcgtgcgataatttatatctataatttcaccttgtaacttaccttttcatgccataccacgatatggcgtgtaacag
- - - - - - - - - - - - - - - - - - - AGATCA