1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GAGCTACGTGTCTCAGGAAGATGTTGACATGGCCATCCGTGTCTTGCTTGACTCTTTTATTTCGACTCAGAAGTTCGGTGTGCAGAAAGCACTTCAAAAGgtaagttttgttggtgttgagctgttattacatcatccagtgctacacaagtacatgcacttgataaacaatttaatgtaaaagtgctcatccatttaac...
species | Zea mays |
transcript | GRMZM2G139894_T02 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: ACTCTTTTATTTCGACTCAGAAATTCGGTGTGCAGAAAGCACTCCAAAAG AATTTCCGGAAGTEST: gi|74242322|gb|DT650236.1|DT650236
genomic: ACTCTTTTATTTCGACTCAGAAGTTCGGTGTGCAGAAAGCACTTCAAAAGgtaagttttg ... gtgtccacagAATTTCCGGAAGT
EST: ACTCTTTTATTTCGACTCAGAAGTTCGGTGTGCAGAAAGCACTTCAAAAG AATTTCCGGAAGTACATGACATTCAAGAAGGACTACAACGAGCTGCTCCTGEST: gi|74242323|gb|DT650237.1|DT650237
genomic: ACTCTTTTATTTCGACTCAGAAGTTCGGTGTGCAGAAAGCACTTCAAAAGgtaagttttg ... gtgtccacagAATTTCCGGAAGTACATGACATTCAAGAAGGACTACAACGAGCTGCTCCTG
EST: ACTCTTTTATTTCGACTCAGAAGTTCGGTGTGCAGAAAGCACTTCAAAAG AATTTCCGGAAGTACATGACATTCAAGAAGGACTACAACGAGCTGCTCCTGEST: gi|32931979|gb|CF036791.1|CF036791
genomic: ACTCTTTTATTTCGACTCAGAAGTTCGGTGTGCAGAAAGCACTTCAAAAGgtaagttttg ... gtgtccacagAATTTCCGGAAGTACATGACATTCAAGAAGGACTACAACGAGCTGCTCCTG
EST: ACTCTTTTATTTCGACTCAGAAATTCGGTGTGCAGAAAGCACTCCAAAAG AATTTCCGGAAGTEST: gi|32934497|gb|CF039309.1|CF039309
genomic: ACTCTTTTATTTCGACTCAGAAGTTCGGTGTGCAGAAAGCACTTCAAAAGgtaagttttg ... gtgtccacagAATTTCCGGAAGT
EST: ACTCTTTTATTTCGACTCAGAAATTCGGTGTGCAGAAAGCACTCCAAAAG AATTTCCGGAAGTEST: gi|18450515|gb|BM428793.1|BM428793
genomic: ACTCTTTTATTTCGACTCAGAAGTTCGGTGTGCAGAAAGCACTTCAAAAGgtaagttttg ... gtgtccacagAATTTCCGGAAGT
EST: ACTCTTTTATTTCGACTCAGAAATTCGGTGTGCAGAAAGCACTCCAAAAG AATTTCCGGAAGTACATGACATTCAAGAAGGACTACAACGAGCTGCTCCTGEST: gi|32932452|gb|CF037264.1|CF037264
genomic: ACTCTTTTATTTCGACTCAGAAGTTCGGTGTGCAGAAAGCACTTCAAAAGgtaagttttg ... gtgtccacagAATTTCCGGAAGTACATGACATTCAAGAAGGACTACAACGAGCTGCTCCTG
EST: ACTCTTTTATTTCGACTCAGAAATTCGGTGTGCAGAAAGCACTCCAAAAG AATTTCCGGAAGTEST: gi|32932490|gb|CF037302.1|CF037302
genomic: ACTCTTTTATTTCGACTCAGAAGTTCGGTGTGCAGAAAGCACTTCAAAAGgtaagttttg ... gtgtccacagAATTTCCGGAAGT
EST: ACTCTTTTATTTCGACTCAGAAATTCGGTGTGCAGAAAGCACTCCAAAAG AATTTCCGGAAGTEST: gi|32911609|gb|CF016421.1|CF016421
genomic: ACTCTTTTATTTCGACTCAGAAGTTCGGTGTGCAGAAAGCACTTCAAAAGgtaagttttg ... gtgtccacagAATTTCCGGAAGT
EST: ACTCTTTTATTTCGACTCAGAAATTCGGTGTGCAGAAAGCACTCCAAAAG AATTTCCGGAAGTACATGACATTCAAGAAGGACTACAACGAGCTGCTCCTG
genomic: ACTCTTTTATTTCGACTCAGAAGTTCGGTGTGCAGAAAGCACTTCAAAAGgtaagttttg ... gtgtccacagAATTTCCGGAAGTACATGACATTCAAGAAGGACTACAACGAGCTGCTCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCTACGTGTCTCAGGAAGATGTTGACATGGCCATCCGTGTCTTGCTTGACTCTTTTATTTCGACTCAGAAGTTCGGTGTGCAGAAAGCACTTCAAAAGgtaagttttgttggtgttgagctgttattacatcatccagtgctacacaagtacatgcacttgataaacaatttaatgtaaaagtgctcatccatttaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT