1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGgtatgaaaaaaataattccatttgttctgtcatgacattctattcctaggaaacgtcttcttgccaattgtcatcagacagttctgcataatgcagatcc...
species | Zea mays |
transcript | GRMZM2G131756_T02 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GTTTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG GATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTCEST: gi|211540330|gb|FL320588.1|FL320588
genomic: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGgtatgaaaaa ... tcttacgcagGATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTC
EST: GTTTTAGAACAGAAGAAATACAANCA-TGCTTCTGGGAGGG GATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGEST: gi|211151599|gb|FL276380.1|FL276380
genomic: GTCTAAGAACAGAAGAAATACAA-CAATGCTTCTGG-AGGGgtatgaaaaa ... tcttacgcagGATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGG
EST: GTTTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG GATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTCEST: gi|60339031|gb|DN206004.1|DN206004
genomic: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGgtatgaaaaa ... tcttacgcagGATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTC
EST: GTTTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG GATTTGTCTGTGTGEST: gi|60358415|gb|DN225388.1|DN225388
genomic: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGgtatgaaaaa ... tcttacgcagGATTTGTCTGTGTG
EST: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG GATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTCEST: gi|32911705|gb|CF016517.1|CF016517
genomic: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGgtatgaaaaa ... tcttacgcagGATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTC
EST: GCTTCTGGAGGG GATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTCEST: gi|60347567|gb|DN214540.1|DN214540
genomic: GCTTCTGGAGGGgtatgaaaaa ... tcttacgcagGATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTC
EST: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG GATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTCEST: gi|31364194|gb|CD448549.1|CD448549
genomic: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGgtatgaaaaa ... tcttacgcagGATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTC
EST: GTCTAAGAACAGAAGAAATACACCAATGCTTCTGGAGGG GATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTCEST: gi|211181361|gb|FL452266.1|FL452266
genomic: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGgtatgaaaaa ... tcttacgcagGATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTC
EST: GTTTAAGAACAGAAGAAATACAMCAATGCTTCTGGAGGG GATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTCEST: gi|60394289|gb|DN227159.1|DN227159
genomic: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGgtatgaaaaa ... tcttacgcagGATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTC
EST: GTTTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG GATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTCEST: gi|211151600|gb|FL276381.1|FL276381
genomic: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGgtatgaaaaa ... tcttacgcagGATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTC
EST: GTTTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG GATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTCEST: gi|9731007|gb|BE509759.1|BE509759
genomic: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGgtatgaaaaa ... tcttacgcagGATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTC
EST: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG GATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTCEST: gi|5901234|gb|AW042334.1|AW042334
genomic: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGgtatgaaaaa ... tcttacgcagGATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTC
EST: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG GATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTCEST: gi|211428318|gb|FL475012.1|FL475012
genomic: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGgtatgaaaaa ... tcttacgcagGATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTC
EST: GTTTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG GATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTCEST: gi|60353813|gb|DN220786.1|DN220786
genomic: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGgtatgaaaaa ... tcttacgcagGATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTC
EST: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG GATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTCEST: gi|4609463|gb|AI600302.1|AI600302
genomic: GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGgtatgaaaaa ... tcttacgcagGATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTC
EST: CAACAATGCTTCTGGAGGG GATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTC
genomic: CAACAATGCTTCTGGAGGGgtatgaaaaa ... tcttacgcagGATTTGTCTGTGTGCGAGGATTCGACATGGAGACTAGAGCACCAAGGCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGgtatgaaaaaaataattccatttgttctgtcatgacattctattcctaggaaacgtcttcttgccaattgtcatcagacagttctgcataatgcagatcc
- - AAGAAC
- - - - - - AAGAAA
- - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaat